View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0156-INSERTION20 (Length: 454)
Name: NF0156-INSERTION20
Description: NF0156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0156-INSERTION20 |
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Alignment Details
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 8 - 453
Target Start/End: Original strand, 44139802 - 44140255
Alignment:
| Q |
8 |
cctctgatattgcaataatatatatgacactaacaggcactcatgcctgata--------cctcaagcagataattctacacttttcggactcatttgat |
99 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
44139802 |
cctctgatattgcaataatatatatgacactagcaggcactcatgcttgataactgccaacctcaagcagataattctaaacttttcggactcatttgat |
44139901 |
T |
|
| Q |
100 |
tcagattaaaaaagaaaatttacacatcgtatgaaaaatgattctttttaaaaatattatataaagtagaaactaattcgtgattatttataatttaaaa |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44139902 |
tcagattaaaaaagaaaatttacacatcgtatgaaaaatgattctttttaaaaatattatataaagtagaaactaattcgtgattatttataatttaaaa |
44140001 |
T |
|
| Q |
200 |
aacacattttgatcattattttcatctactacactgacaatcactatttttcctacttttctccttccttgcttaaactacataatttcacaaaaaatac |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44140002 |
aacacattttgatcattattttcatctactacactgacaatcactatttttcctacttttctccttcctttcttaaactacataatttcacaaaaaatac |
44140101 |
T |
|
| Q |
300 |
tgcattgtatttatcttcatcatcaaatacgttatgctaatgagtagctaatgcaaagtcaaaattacctttgcttttgataatgtatctggaggtgaca |
399 |
Q |
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|| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44140102 |
tgtattgtatttatcgtcatcatcaaatacgttatgctaatgagtagctaatgcaaagtcaaaattacctttgcttttgataatgtatctggaggtgaca |
44140201 |
T |
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| Q |
400 |
ttacttttggctgtacatagttcttcccacggtaaaaaatgataatattcttgg |
453 |
Q |
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| T |
44140202 |
ttacttttggctgtacatagttcttcccacggtaaaaaatgataatattattgg |
44140255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 8 - 446
Target Start/End: Original strand, 50060381 - 50060828
Alignment:
| Q |
8 |
cctctgatattgcaataatatatatgacactaacaggcactcatgcctgata--------cctcaagcagataattctacacttttcggactcatttgat |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
50060381 |
cctctgatattgcaataatatatatgacactaacaggcactcatgcatgataactgccaacctcaagcagataattctaaacttttcggactcatttgat |
50060480 |
T |
|
| Q |
100 |
tcagattaaaaaagaaaatttacacatcgtatgaaaaatgattctttttaaaaatattatataaagtagaaactaattcgtgattatttataatttaaaa |
199 |
Q |
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| T |
50060481 |
tcagattaaaaaagaaaatttacacatcgtatgaaaaatgattctttttaaaaatattatataaagtagaaactaattcgtgattatttataatttaaaa |
50060580 |
T |
|
| Q |
200 |
aacacattttgatcattat-tttcatctactacactgacaatcactatttttcctacttttctccttccttgcttaaactacataatttcacaaaaaata |
298 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
50060581 |
aacacattttgatcattatctttcatctactacactgacaatcactatttttcctacttttctccttccttacttaaactacataatttcacaaaaaata |
50060680 |
T |
|
| Q |
299 |
ctgcattgtatttatcttcatcatcaaatacgttatgctaatgagtagctaatgcaaagtcaaaattacctttgcttttgataatgtatctggaggtgac |
398 |
Q |
| |
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||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50060681 |
ctgtattgtatttatcgtcatcatcaaatacgttatgctaatgagtagctaatgcaaagtcaaaattacctttgcttttgataatgtatctggaggtgac |
50060780 |
T |
|
| Q |
399 |
attacttttggctgtacatagttcttcccacggtaaaaaatgataata |
446 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
50060781 |
attacttttggctgtacatagttcatcccacggtaaaaaatgataata |
50060828 |
T |
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