View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0156-INSERTION20 (Length: 454)
Name: NF0156-INSERTION20
Description: NF0156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0156-INSERTION20
Alignment Details
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 8 - 453
Target Start/End: Original strand, 44139802 - 44140255
Alignment:
Q
8
cctctgatattgcaataatatatatgacactaacaggcactcatgcctgata--------cctcaagcagataattctacacttttcggactcatttgat
99
Q
|||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||
T
44139802
cctctgatattgcaataatatatatgacactagcaggcactcatgcttgataactgccaacctcaagcagataattctaaacttttcggactcatttgat
44139901
T
Q
100
tcagattaaaaaagaaaatttacacatcgtatgaaaaatgattctttttaaaaatattatataaagtagaaactaattcgtgattatttataatttaaaa
199
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
44139902
tcagattaaaaaagaaaatttacacatcgtatgaaaaatgattctttttaaaaatattatataaagtagaaactaattcgtgattatttataatttaaaa
44140001
T
Q
200
aacacattttgatcattattttcatctactacactgacaatcactatttttcctacttttctccttccttgcttaaactacataatttcacaaaaaatac
299
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
T
44140002
aacacattttgatcattattttcatctactacactgacaatcactatttttcctacttttctccttcctttcttaaactacataatttcacaaaaaatac
44140101
T
Q
300
tgcattgtatttatcttcatcatcaaatacgttatgctaatgagtagctaatgcaaagtcaaaattacctttgcttttgataatgtatctggaggtgaca
399
Q
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
44140102
tgtattgtatttatcgtcatcatcaaatacgttatgctaatgagtagctaatgcaaagtcaaaattacctttgcttttgataatgtatctggaggtgaca
44140201
T
Q
400
ttacttttggctgtacatagttcttcccacggtaaaaaatgataatattcttgg
453
Q
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
T
44140202
ttacttttggctgtacatagttcttcccacggtaaaaaatgataatattattgg
44140255
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 8 - 446
Target Start/End: Original strand, 50060381 - 50060828
Alignment:
Q
8
cctctgatattgcaataatatatatgacactaacaggcactcatgcctgata--------cctcaagcagataattctacacttttcggactcatttgat
99
Q
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||
T
50060381
cctctgatattgcaataatatatatgacactaacaggcactcatgcatgataactgccaacctcaagcagataattctaaacttttcggactcatttgat
50060480
T
Q
100
tcagattaaaaaagaaaatttacacatcgtatgaaaaatgattctttttaaaaatattatataaagtagaaactaattcgtgattatttataatttaaaa
199
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
50060481
tcagattaaaaaagaaaatttacacatcgtatgaaaaatgattctttttaaaaatattatataaagtagaaactaattcgtgattatttataatttaaaa
50060580
T
Q
200
aacacattttgatcattat-tttcatctactacactgacaatcactatttttcctacttttctccttccttgcttaaactacataatttcacaaaaaata
298
Q
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
T
50060581
aacacattttgatcattatctttcatctactacactgacaatcactatttttcctacttttctccttccttacttaaactacataatttcacaaaaaata
50060680
T
Q
299
ctgcattgtatttatcttcatcatcaaatacgttatgctaatgagtagctaatgcaaagtcaaaattacctttgcttttgataatgtatctggaggtgac
398
Q
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
50060681
ctgtattgtatttatcgtcatcatcaaatacgttatgctaatgagtagctaatgcaaagtcaaaattacctttgcttttgataatgtatctggaggtgac
50060780
T
Q
399
attacttttggctgtacatagttcttcccacggtaaaaaatgataata
446
Q
|||||||||||||||||||||||| |||||||||||||||||||||||
T
50060781
attacttttggctgtacatagttcatcccacggtaaaaaatgataata
50060828
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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