View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0156-INSERTION21 (Length: 332)
Name: NF0156-INSERTION21
Description: NF0156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0156-INSERTION21 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 7 - 325
Target Start/End: Complemental strand, 12198751 - 12198434
Alignment:
| Q |
7 |
acatcaatcattttgttactacatgtataactcattttaatagtgttttatctgagcaatgttgtgtcgtagtaaataattccccgattgtttgtctcca |
106 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12198751 |
acatcaatcattttgttactccatgtataactcattttaatagtgttttatctcagcaatgttgtgtcgtagtaaataattccccgattgtttgtctcca |
12198652 |
T |
|
| Q |
107 |
cgtcatctaccgcctctaaatttgactcaaatggttgcaaccacaagtgtcaactggacttccaagccccccttgaaatccactgtgacaaccttgatg- |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
12198651 |
cgtcatctaccgcctctaaatttgactcaaatggttgcaaccacaagtgtcaactggacttccaagccccccttgaaatccattgtgacaaccttgatgt |
12198552 |
T |
|
| Q |
206 |
nnnnnnnnagtacgaggcttataaaggttatcaccaaaatcaaacacccttttagcttgaaaaacgagttgtcaaacatctgtttgaattgattatctca |
305 |
Q |
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|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
12198551 |
ttttttttagtatgaggcttataaaggttatcaccaaaatc-aacacccttttagcttgaaaaacgagttgtc-aacatctgtttgaattgatcatctca |
12198454 |
T |
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| Q |
306 |
tagaccacaatcaattccat |
325 |
Q |
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| |||||||||||||||||| |
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| T |
12198453 |
ttgaccacaatcaattccat |
12198434 |
T |
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