View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0156-INSERTION3 (Length: 729)
Name: NF0156-INSERTION3
Description: NF0156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0156-INSERTION3 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 429 - 729
Target Start/End: Original strand, 28263084 - 28263383
Alignment:
| Q |
429 |
tggatttaaaactccaaaatcaaatcaaaaagtttattcttggaagtggatctcaaattcccctaccatttccgcgcgcaaaagggtgatcgacatcaca |
528 |
Q |
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| T |
28263084 |
tggatttaaaaccccaaaatcaaatcaaaaagtttattcttgtaagtggatctcaaattcccctaccatgcccccacgcaaaagggtgatcgacatcaca |
28263183 |
T |
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| Q |
529 |
aaaattattctcttgctccaccaaaaccctactttaatctcaccttaagtacgttttttgaagaagcaattcaacacatactacataatagattaagctc |
628 |
Q |
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| T |
28263184 |
aaaattattctcttgctccaccaaaaccctactttaatcttgccttaagtatgctttttaaagaagcaattcaacacatactacataataggttaagttc |
28263283 |
T |
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| Q |
629 |
aaaacacgcatagaatatagggatgccacaaaaactaaatacttgaccataaattgtcaatttattaaagaaaagtatcaacacaacctattaacgtaac |
728 |
Q |
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| T |
28263284 |
aaaacacgcttagaatataaggatgccacaaaaactaaatacttgaccataaattgtcaatttattaaa-aaaagtatcaacacgacctattaacgtaac |
28263382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 164 - 425
Target Start/End: Original strand, 28262450 - 28262712
Alignment:
| Q |
164 |
ctaagtcattgaaaagaacatacataagacatcatcaaacaaagaagatgataatcatggttagggttcattgaacgtgacaagatgatttgaactatta |
263 |
Q |
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| T |
28262450 |
ctaagtcattgaaaagaacatacataagacatcatcaaacaaagaagatgataatcatggttagggttcattgaacgtgataagatgatttgaactatta |
28262549 |
T |
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| Q |
264 |
gctttcaatttaacaaaaatgtcagatatgatgaatatatatagttcagagaaccttaggtgatcaaattatt-nnnnnnntggaccctgcttgaatcat |
362 |
Q |
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| T |
28262550 |
actttcaatttaacaaaaatgtcggatatgatgaatataaatagttcagagaaccttaggtgatcaaattattaaaaaaaatggaccctgcctgaatcat |
28262649 |
T |
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| Q |
363 |
tagggattgagagtcatgaatgaaatagaatgtcaagataacgttcaatgtgatttttgaata |
425 |
Q |
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| T |
28262650 |
tagggattgagagtcatgaatgaaatagaatgtcaagacaacgttcaatgtgatttttgaata |
28262712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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