View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0156-INSERTION4 (Length: 676)

Name: NF0156-INSERTION4
Description: NF0156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0156-INSERTION4
NF0156-INSERTION4
[»] chr7 (30 HSPs)
chr7 (17-665)||(4643346-4644005)
chr7 (505-665)||(4845809-4845969)
chr7 (236-442)||(4863831-4864037)
chr7 (505-665)||(4711869-4712029)
chr7 (508-665)||(4663135-4663289)
chr7 (226-447)||(4697165-4697386)
chr7 (505-664)||(4667079-4667238)
chr7 (226-441)||(4672575-4672790)
chr7 (505-665)||(4631068-4631225)
chr7 (193-441)||(4636714-4636971)
chr7 (226-447)||(4630826-4631047)
chr7 (222-441)||(4662886-4663105)
chr7 (505-664)||(4672844-4673000)
chr7 (235-447)||(4783810-4784022)
chr7 (235-447)||(4816239-4816451)
chr7 (222-441)||(4712056-4712275)
chr7 (505-664)||(4864063-4864219)
chr7 (506-664)||(4696988-4697143)
chr7 (495-660)||(4653651-4653813)
chr7 (222-441)||(4845996-4846215)
chr7 (245-441)||(4666853-4667052)
chr7 (505-661)||(4783636-4783789)
chr7 (505-661)||(4816065-4816218)
chr7 (127-233)||(4661583-4661689)
chr7 (370-428)||(4647569-4647625)
chr7 (229-447)||(4653422-4653640)
chr7 (592-665)||(4637082-4637155)
chr7 (119-162)||(4666697-4666740)
chr7 (505-553)||(4636998-4637046)
chr7 (193-229)||(4647384-4647420)
[»] chr4 (3 HSPs)
chr4 (228-441)||(18925723-18925936)
chr4 (505-665)||(18925539-18925696)
chr4 (119-166)||(18926028-18926075)


Alignment Details
Target: chr7 (Bit Score: 372; Significance: 0; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 17 - 665
Target Start/End: Original strand, 4643346 - 4644005
Alignment:
Q  17 gaaattgctagtacgaggccagaaatggtagtcacaacaacaatagccacgagtggggtgatcttaattctttttgccgattgggttgaaattgcaatcg 116  Q
    ||||||||||| || ||||||||||  | ||||||||||||||||||||| ||||||||||||||| || |||||| |||||||||||||| ||||||||    
T  4643346 gaaattgctagcacaaggccagaaactgaagtcacaacaacaatagccacaagtggggtgatcttagttatttttgacgattgggttgaaactgcaatcg 4643445  T
Q  117 caagattgttatttttgtcacttatttttaaaatttcgataccattcaatatgaaaccagtgtgttctgtcaatgattgaagcttgattgaaagattagc 216  Q
    | |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||    
T  4643446 cgagattgttatttttgtcacttatttttaaaatctcgattccattcaatatgaaaccattgtattctgtcaatggttgaagcttgattgaaagattagc 4643545  T
Q  217 tctttcattttgagag---------------tacatagccacagcataatccttatgaacaggaactaaacgagcaccactccaataaagcacatcagct 301  Q
    |||||||  |||||||               | ||||| ||  ||||||||||||||||||||||| |||||||||||||||||    | |||||| ||     
T  4643546 tctttcaagttgagagcttccttcttgatagtccatagacattgcataatccttatgaacaggaaccaaacgagcaccactccaccctatcacatccgcc 4643645  T
Q  302 ttttcttcagccaaactgttagctatgaaaatcttaaagactctatcacctttatttgttatatccggatcaaactcacaaaaatgtaaccttaccatat 401  Q
    ||||||||| ||||| ||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4643646 ttttcttcaaccaaagtgttatctatgaatatctgaaagactctatcacctttatttgttatatccggatcaaactcacaaaaatgtaaccttaccatat 4643745  T
Q  402 aagtaaaaccaaaatcaacctcaaaattccaagttacattgaaatcattttcccaactactaagacacaccaaaaccatttgatatctcgaatttcattt 501  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |   ||||||||||    
T  4643746 aagtaaaaccagaatcaacctcaaaattccaagttacattgaaatcattttcccaactact-agacacaccaaaaccatttgataccaataatttcattt 4643844  T
Q  502 caaaacttcttgaagttaagtaaacagcttctggtgcagtgtaatttggaatagtattgtttaaatagtttagatgatcacttccataaacacttgatac 601  Q
    | |||||||||| |||||| |||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||    | ||||| || |||||||    
T  4643845 ctaaacttcttgcagttaaataaacagcttctggtgcagtgtaatttggaatggcattttttaaatagtttagatgat---gttcataatcatttgatac 4643941  T
Q  602 actttgtggatattctttctccaagtaacgaggagaatcattgtcccaattacgaaacatacct 665  Q
     ||| | ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4643942 gcttagcggatattgtttctccaagtaacgaggataatcattgtcccaattacgaaacatacct 4644005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 505 - 665
Target Start/End: Complemental strand, 4845969 - 4845809
Alignment:
Q  505 aacttcttgaagttaagtaaacagcttctggtgcagtgtaatttggaatagtattgtttaaatagtttagatgatcacttccataaacacttgatacact 604  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4845969 aacttcttgcagttaagtatacagcttctggtgcagtgtaatttggaatagtattgtttaaatagtttagatgatcacttccataaaaacttgatacact 4845870  T
Q  605 ttgtggatattctttctccaagtaacgaggagaatcattgtcccaattacgaaacatacct 665  Q
      ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  4845869 aagtggatattctttctccaagtaacgaggaaaatcattgtcccaattgcgaaacatacct 4845809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 236 - 442
Target Start/End: Original strand, 4863831 - 4864037
Alignment:
Q  236 atagccacagcataatccttatgaacaggaactaaacgagcaccactccaataaagcacatcagctttttcttcagccaaactgttagctatgaaaatct 335  Q
    |||| ||||| ||||||||||||||||||||| | ||||| ||| |||||    | ||||||||| ||||| ||||||| ||| ||| ||||||||||||    
T  4863831 atagacacagtataatccttatgaacaggaaccatacgagaaccgctccaccgtatcacatcagcgttttcctcagccatactattaactatgaaaatct 4863930  T
Q  336 taaagactctatcacctttatttgttatatccggatcaaactcacaaaaatgtaaccttaccatataagtaaaaccaaaatcaacctcaaaattccaagt 435  Q
     |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  | ||||||| ||||||||||||||    
T  4863931 gaaaggctctatcacctttatttgttatattcggatcaaactcacaaaaatgtaaccttaccatataagtaaaattagaatcaacttcaaaattccaagt 4864030  T
Q  436 tacattg 442  Q
    |||||||    
T  4864031 tacattg 4864037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 505 - 665
Target Start/End: Complemental strand, 4712029 - 4711869
Alignment:
Q  505 aacttcttgaagttaagtaaacagcttctggtgcagtgtaatttggaatagtattgtttaaatagtttagatgatcacttccataaacacttgatacact 604  Q
    ||||||||| ||| ||||| ||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  4712029 aacttcttgcagtaaagtatacagcttctggtgcagtgtaattgggaatggtattgtttaaatagtttggatgatcacttccataaacagttgatacact 4711930  T
Q  605 ttgtggatattctttctccaagtaacgaggagaatcattgtcccaattacgaaacatacct 665  Q
    ||||||||||||||| |||| |||| ||||| ||||| |||||||||||||||||||||||    
T  4711929 ttgtggatattctttttccaggtaaagaggaaaatcactgtcccaattacgaaacatacct 4711869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 508 - 665
Target Start/End: Original strand, 4663135 - 4663289
Alignment:
Q  508 ttcttgaagttaagtaaacagcttctggtgcagtgtaatttggaatagtattgtttaaatagtttagatgatcacttccataaacacttgatacactttg 607  Q
    |||||| ||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||   |||| || ||||||||||||||||    
T  4663135 ttcttgcagttaagtatacagtttctggtgcagtgtaatttggaatggtattgtttaaatagtttagatgatc---tccaaaatcacttgatacactttg 4663231  T
Q  608 tggatattctttctccaagtaacgaggagaatcattgtcccaattacgaaacatacct 665  Q
    |||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||    
T  4663232 tggatattctatctccaagtaacgaggagaatcattttcccaataacgaaacatacct 4663289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 226 - 447
Target Start/End: Complemental strand, 4697386 - 4697165
Alignment:
Q  226 ttgagagtacatagccacagcataatccttatgaacaggaactaaacgagcaccactccaataaagcacatcagctttttcttcagccaaactgttagct 325  Q
    |||||||| ||||| |||||||||||| |||||||||||||| | | ||| |  ||||||| ||| ||||||||| |||   || |||||| | ||||||    
T  4697386 ttgagagtgcatagacacagcataatctttatgaacaggaaccataggagtagtactccaagaaatcacatcagcgtttatctccgccaaagtattagct 4697287  T
Q  326 atgaaaatcttaaagactctatcacctttatttgttatatccggatcaaactcacaaaaatgtaaccttaccatataagtaaaaccaaaatcaacctcaa 425  Q
    ||||| || | |||||||||||||||| ||||| | |||| | ||||||||||||||||||| ||||||||||||||||||||||||| |||||| || |    
T  4697286 atgaatatttgaaagactctatcacctatatttttgatatgctgatcaaactcacaaaaatgcaaccttaccatataagtaaaaccaacatcaacttcga 4697187  T
Q  426 aattccaagttacattgaaatc 447  Q
    ||||||||||||||||||||||    
T  4697186 aattccaagttacattgaaatc 4697165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 505 - 664
Target Start/End: Original strand, 4667079 - 4667238
Alignment:
Q  505 aacttcttgaagttaagtaaacagcttctggtgcagtgtaatttggaatagtattgtttaaatagtttagatgatcacttccataaacacttgatacact 604  Q
    ||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||| | |||||||||| ||||||||  |||| ||  ||||||||  ||    
T  4667079 aacttcttgcagttaagtacacaacttctggtgcagtgtaatttggaatagtattttgtaaatagtttggatgatcaggtccaaaataacttgatatgct 4667178  T
Q  605 ttgtggatattctttctccaagtaacgaggagaatcattgtcccaattacgaaacatacc 664  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4667179 ttgtggatattgtttctccaagtaacgaggaaaatcattgtcccaattacgaaacatacc 4667238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 226 - 441
Target Start/End: Original strand, 4672575 - 4672790
Alignment:
Q  226 ttgagagtacatagccacagcataatccttatgaacaggaactaaacgagcaccactccaataaagcacatcagctttttcttcagccaaactgttagct 325  Q
    ||||||||||||||  |||||||||||||||||||||||||| | ||||||||||||||||   |  ||||||||| |||| ||||||| | ||||||||    
T  4672575 ttgagagtacatagtgacagcataatccttatgaacaggaaccatacgagcaccactccaacttataacatcagctctttcctcagccagagtgttagct 4672674  T
Q  326 atgaaaatcttaaagactctatcacctttatttgttatatccggatcaaactcacaaaaatgtaaccttaccatataagtaaaaccaaaatcaacctcaa 425  Q
    || ||||||| |||| ||||||||||| ||||  | |||  |   ||||||||||||||||||||||||||||||||||| |||  | ||||||||||||    
T  4672675 ataaaaatctgaaaggctctatcacctgtattaatgataagcctgtcaaactcacaaaaatgtaaccttaccatataagtgaaagaagaatcaacctcaa 4672774  T
Q  426 aattccaagttacatt 441  Q
    ||||||||||||||||    
T  4672775 aattccaagttacatt 4672790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 505 - 665
Target Start/End: Original strand, 4631068 - 4631225
Alignment:
Q  505 aacttcttgaagttaagtaaacagcttctggtgcagtgtaatttggaatagtattgtttaaatagtttagatgatcacttccataaacacttgatacact 604  Q
    ||||||| | ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    |||| ||  ||||||||||||    
T  4631068 aacttctcgcagttaagtaaacagcttctggtgcagtgtaatttgaaatggtattgtttaaatagtttagatgat---gtccaaaataacttgatacact 4631164  T
Q  605 ttgtggatattctttctccaagtaacgaggagaatcattgtcccaattacgaaacatacct 665  Q
      ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  4631165 aagtggatattctttctccaagtaacgaggaaaatcattgtcccaattgcgaaacatacct 4631225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 193 - 441
Target Start/End: Original strand, 4636714 - 4636971
Alignment:
Q  193 ttgaagcttgattgaaagattagctctttcattttgagag---------tacatagccacagcataatccttatgaacaggaactaaacgagcaccactc 283  Q
    |||||||||||||||||||| | |||||||| ||||||||         | |||||  ||| |||||||||||||||||||||| | |||||||||||||    
T  4636714 ttgaagcttgattgaaagataaactctttcaatttgagagattaatccctccatagaaacaacataatccttatgaacaggaaccatacgagcaccactc 4636813  T
Q  284 caataaagcacatcagctttttcttcagccaaactgttagctatgaaaatcttaaagactctatcacctttatttgttatatccggatcaaactcacaaa 383  Q
    ||    | |||||| || ||||||||| ||||| ||||| ||||||| |||| ||||||||||||||||||||   | |||| |  ||||||||||||||    
T  4636814 caccctatcacatccgccttttcttcaaccaaagtgttatctatgaatatctgaaagactctatcacctttatagttgatatgccaatcaaactcacaaa 4636913  T
Q  384 aatgtaaccttaccatataagtaaaaccaaaatcaacctcaaaattccaagttacatt 441  Q
    |||||||||||||||||||||||||| || ||||||| ||||| ||||||||||||||    
T  4636914 aatgtaaccttaccatataagtaaaagcagaatcaacttcaaagttccaagttacatt 4636971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 226 - 447
Target Start/End: Original strand, 4630826 - 4631047
Alignment:
Q  226 ttgagagtacatagccacagcataatccttatgaacaggaactaaacgagcaccactccaataaagcacatcagctttttcttcagccaaactgttagct 325  Q
    |||||||||||||  |||| ||||||||||||||  |||||| | |||||||||||||||    | ||||||||||||||| ||||| | | ||||||||    
T  4630826 ttgagagtacataagcacaacataatccttatgagtaggaaccatacgagcaccactccaccttatcacatcagctttttcctcagctagaatgttagct 4630925  T
Q  326 atgaaaatcttaaagactctatcacctttatttgttatatccggatcaaactcacaaaaatgtaaccttaccatataagtaaaaccaaaatcaacctcaa 425  Q
    |||||||||| ||||||||||||||||| || | ||||   |   |||||||||||||||||||| ||||||||||||||||||  | ||||||| ||||    
T  4630926 atgaaaatctgaaagactctatcaccttgatctcttatcgtcatttcaaactcacaaaaatgtaatcttaccatataagtaaaagaagaatcaacttcaa 4631025  T
Q  426 aattccaagttacattgaaatc 447  Q
    ||||||||||||||||| ||||    
T  4631026 aattccaagttacattgtaatc 4631047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 222 - 441
Target Start/End: Original strand, 4662886 - 4663105
Alignment:
Q  222 cattttgagagtacatagccacagcataatccttatgaacaggaactaaacgagcaccactccaataaagcacatcagctttttcttcagccaaactgtt 321  Q
    |||||||||||||||||| |||| |||||||||||||||||||||| | |||| ||  ||||||    | |||||| |||  ||||||| | ||| | |     
T  4662886 cattttgagagtacatagtcacaccataatccttatgaacaggaaccatacgaccattactccaccttatcacatcggctaattcttcaactaaattatc 4662985  T
Q  322 agctatgaaaatcttaaagactctatcacctttatttgttatatccggatcaaactcacaaaaatgtaaccttaccatataagtaaaaccaaaatcaacc 421  Q
    | |||| ||||||| ||| | |||||||||||||||| | |||| ||||||||||||||||||||||||||||||||| || ||||||  | ||||||||    
T  4662986 atctataaaaatctgaaacattctatcacctttatttatgatattcggatcaaactcacaaaaatgtaaccttaccatgtatgtaaaagaagaatcaacc 4663085  T
Q  422 tcaaaattccaagttacatt 441  Q
    ||||||||||||||||||||    
T  4663086 tcaaaattccaagttacatt 4663105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 505 - 664
Target Start/End: Original strand, 4672844 - 4673000
Alignment:
Q  505 aacttcttgaagttaagtaaacagcttctggtgcagtgtaatttggaatagtattgtttaaatagtttagatgatcacttccataaacacttgatacact 604  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||   |   |||  |||||||||||||    
T  4672844 aacttcttgcagttacgtaaacagcttctggtgcagtgtaatttggaatggtattgtttaaaaagttgagatgatgcat---atactcacttgatacact 4672940  T
Q  605 ttgtggatattctttctccaagtaacgaggagaatcattgtcccaattacgaaacatacc 664  Q
      ||||||||| |||||||||||||| | || ||||||||||||||||||||||||||||    
T  4672941 aagtggatattgtttctccaagtaaccatgaaaatcattgtcccaattacgaaacatacc 4673000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 235 - 447
Target Start/End: Complemental strand, 4784022 - 4783810
Alignment:
Q  235 catagccacagcataatccttatgaacaggaactaaacgagcaccactccaataaagcacatcagctttttcttcagccaaactgttagctatgaaaatc 334  Q
    ||||| ||| ||||||||||||||||||||||| ||| |||||||||||||    | |||||||||    | |||||||||||| | | |||||||||||    
T  4784022 catagtcacggcataatccttatgaacaggaaccaaaggagcaccactccaccttatcacatcagcagcatgttcagccaaactatcatctatgaaaatc 4783923  T
Q  335 ttaaagactctatcacctttatttgttatatccggatcaaactcacaaaaatgtaaccttaccatataagtaaaaccaaaatcaacctcaaaattccaag 434  Q
    | ||| | ||||||||| |  | | | |||| |  |||||||||||||||||||||||||||||||||||||||| || ||||||| ||||| |||||||    
T  4783922 tgaaaaattctatcaccatcctgtttgatatgccaatcaaactcacaaaaatgtaaccttaccatataagtaaaagcagaatcaacttcaaagttccaag 4783823  T
Q  435 ttacattgaaatc 447  Q
    |||||||| ||||    
T  4783822 ttacattgtaatc 4783810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 235 - 447
Target Start/End: Complemental strand, 4816451 - 4816239
Alignment:
Q  235 catagccacagcataatccttatgaacaggaactaaacgagcaccactccaataaagcacatcagctttttcttcagccaaactgttagctatgaaaatc 334  Q
    ||||| ||| ||||||||||||||||||||||| ||| |||||||||||||  | | |||||||||      |||||||||||| | | |||||||||||    
T  4816451 catagtcacggcataatccttatgaacaggaacaaaaggagcaccactccaccatatcacatcagcaaaaagttcagccaaactatcatctatgaaaatc 4816352  T
Q  335 ttaaagactctatcacctttatttgttatatccggatcaaactcacaaaaatgtaaccttaccatataagtaaaaccaaaatcaacctcaaaattccaag 434  Q
    | ||| | ||||||||| |  | | | |||| |  |||||||||||||||||||||||||||||||||||||||| || ||||||| ||||| |||||||    
T  4816351 tgaaaaattctatcaccatcctgtttgatatgccaatcaaactcacaaaaatgtaaccttaccatataagtaaaagcagaatcaacttcaaagttccaag 4816252  T
Q  435 ttacattgaaatc 447  Q
    |||||||| ||||    
T  4816251 ttacattgtaatc 4816239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 222 - 441
Target Start/End: Complemental strand, 4712275 - 4712056
Alignment:
Q  222 cattttgagagtacatagccacagcataatccttatgaacaggaactaaacgagcaccactccaataaagcacatcagctttttcttcagccaaactgtt 321  Q
    ||||||||||||||||   ||||||||||||||||||||||||||  |    | |||||||||| |||| ||||||||| | || |||||||||| | |     
T  4712275 cattttgagagtacattttcacagcataatccttatgaacaggaatcatgttaccaccactccagtaaatcacatcagcgtattgttcagccaaaatatc 4712176  T
Q  322 agctatgaaaatcttaaagactctatcacctttatttgttatatccggatcaaactcacaaaaatgtaaccttaccatataagtaaaaccaaaatcaacc 421  Q
    |   || || |||| ||| |||||||||||||||||  | |||  | |||||||||||||||||||||||||||||||||||||||||| | |||||||     
T  4712175 attgataaatatctgaaaaactctatcacctttattcttgataagcagatcaaactcacaaaaatgtaaccttaccatataagtaaaactagaatcaact 4712076  T
Q  422 tcaaaattccaagttacatt 441  Q
    |  |||||||||||||||||    
T  4712075 ttgaaattccaagttacatt 4712056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 505 - 664
Target Start/End: Original strand, 4864063 - 4864219
Alignment:
Q  505 aacttcttgaagttaagtaaacagcttctggtgcagtgtaatttggaatagtattgtttaaatagtttagatgatcacttccataaacacttgatacact 604  Q
    ||||||||| ||||||||| ||| |||||||||||||||||||| |||| || ||||||  |||||| |||||||   |   | || |||||||||  ||    
T  4864063 aacttcttgcagttaagtacacaacttctggtgcagtgtaattttgaatggtgttgttttcatagttaagatgatgttt---aaaatcacttgatatgct 4864159  T
Q  605 ttgtggatattctttctccaagtaacgaggagaatcattgtcccaattacgaaacatacc 664  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4864160 ttgtggatattgtttctccaagtaacgaggaaaatcattgtcccaattacgaaacatacc 4864219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 506 - 664
Target Start/End: Complemental strand, 4697143 - 4696988
Alignment:
Q  506 acttcttgaagttaagtaaacagcttctggtgcagtgtaatttggaatagtattgtttaaatagtttagatgatcacttccataaacacttgatacactt 605  Q
    |||||||| ||||||||| |||||||||||||||||||||||| |||| || ||||||  |||||| |||||||   |   | || |||||||||  |||    
T  4697143 acttcttgcagttaagtacacagcttctggtgcagtgtaattttgaatggtgttgttttcatagttaagatgatgttt---aaaatcacttgatatgctt 4697047  T
Q  606 tgtggatattctttctccaagtaacgaggagaatcattgtcccaattacgaaacatacc 664  Q
    |||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  4697046 tgtggatattgtttctccaagtaacgaggaaaatcattgtcccagttacgaaacatacc 4696988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 495 - 660
Target Start/End: Original strand, 4653651 - 4653813
Alignment:
Q  495 ttcatttcaaaacttcttgaagttaagtaaacagcttctggtgcagtgtaatttggaatagtattgtttaaatagtttagatgatcacttccataaacac 594  Q
    |||||| || ||||||| | ||||| ||| ||||||||||||||  ||||||||||||| |||||||||  |||||| |||||||   || || || |||    
T  4653651 ttcattccataacttctcgcagttaggtatacagcttctggtgcgatgtaatttggaattgtattgtttttatagttgagatgat---ttacaaaatcac 4653747  T
Q  595 ttgatacactttgtggatattctttctccaagtaacgaggagaatcattgtcccaattacgaaaca 660  Q
    ||||||||||| ||||||||| |||||| |||||||||||| |||| || ||||||||||||||||    
T  4653748 ttgatacacttagtggatattgtttctctaagtaacgaggataatcgttatcccaattacgaaaca 4653813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 222 - 441
Target Start/End: Complemental strand, 4846215 - 4845996
Alignment:
Q  222 cattttgagagtacatagccacagcataatccttatgaacaggaactaaacgagcaccactccaataaagcacatcagctttttcttcagccaaactgtt 321  Q
    ||||||||||||| ||   ||||||||||||||||||||||||||  |    | ||||||||||| ||| ||||||||| | |  |||||||||| | |     
T  4846215 cattttgagagtagattttcacagcataatccttatgaacaggaatcatgttaccaccactccaaaaaatcacatcagcatatagttcagccaaaatatc 4846116  T
Q  322 agctatgaaaatcttaaagactctatcacctttatttgttatatccggatcaaactcacaaaaatgtaaccttaccatataagtaaaaccaaaatcaacc 421  Q
    |   || || |||| ||| |||||||||||||||||  |  ||  | |||||||||||||||||||||||||||||||||||||||||| | |||||||     
T  4846115 attgataaatatctgaaaaactctatcacctttattcttggtaagcagatcaaactcacaaaaatgtaaccttaccatataagtaaaactagaatcaact 4846016  T
Q  422 tcaaaattccaagttacatt 441  Q
    || |||||||||||||||||    
T  4846015 tcgaaattccaagttacatt 4845996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 245 - 441
Target Start/End: Original strand, 4666853 - 4667052
Alignment:
Q  245 gcataatccttatgaacaggaactaaacgagcaccact---ccaataaagcacatcagctttttcttcagccaaactgttagctatgaaaatcttaaaga 341  Q
    ||||||||||||||||||||||| | |||| |||||||   |||||||||||| |||||  ||  |||||||| | | | | |||| ||||||| ||| |    
T  4666853 gcataatccttatgaacaggaaccatacgaacaccactactccaataaagcacgtcagcccttggttcagccataatatcatctataaaaatctgaaaaa 4666952  T
Q  342 ctctatcacctttatttgttatatccggatcaaactcacaaaaatgtaaccttaccatataagtaaaaccaaaatcaacctcaaaattccaagttacatt 441  Q
    |||||||||||  |||  | |||| |  |||||||||||||||||| |||||||||||||||||||||  | ||||||| | ||||||||| || |||||    
T  4666953 ctctatcacctggattcttgatatgccaatcaaactcacaaaaatgcaaccttaccatataagtaaaaatagaatcaactttaaaattccatgtcacatt 4667052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 505 - 661
Target Start/End: Complemental strand, 4783789 - 4783636
Alignment:
Q  505 aacttcttgaagttaagtaaacagcttctggtgcagtgtaatttggaatagtattgtttaaatagtttagatgatcacttccataaacacttgatacact 604  Q
    ||||||||| ||||||||||||| ||||||||||| |||||||||||||   |||||||  |||  |||| | ||   |   | |  |||||||||||||    
T  4783789 aacttcttgcagttaagtaaacaccttctggtgcaatgtaatttggaatgacattgtttttatatgttaggttatgtgt---aaagtcacttgatacact 4783693  T
Q  605 ttgtggatattctttctccaagtaacgaggagaatcattgtcccaattacgaaacat 661  Q
       ||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  4783692 agatgggtactctttctccaagtaacgaggagaatcattgtcccaattacgaaacat 4783636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 505 - 661
Target Start/End: Complemental strand, 4816218 - 4816065
Alignment:
Q  505 aacttcttgaagttaagtaaacagcttctggtgcagtgtaatttggaatagtattgtttaaatagtttagatgatcacttccataaacacttgatacact 604  Q
    ||||||||| ||||||||||||| ||||||||||| |||||||||||||   |||||||  |||  |||| | ||   |   | |  |||||||||||||    
T  4816218 aacttcttgcagttaagtaaacaccttctggtgcaatgtaatttggaatgacattgtttttatatgttaggttatgtgt---aaagtcacttgatacact 4816122  T
Q  605 ttgtggatattctttctccaagtaacgaggagaatcattgtcccaattacgaaacat 661  Q
       ||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  4816121 agatgggtactctttctccaagtaacgaggagaatcattgtcccaattacgaaacat 4816065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 127 - 233
Target Start/End: Original strand, 4661583 - 4661689
Alignment:
Q  127 atttttgtcacttatttttaaaatttcgataccattcaatatgaaaccagtgtgttctgtcaatgattgaagcttgattgaaagattagctctttcattt 226  Q
    ||||| ||||||||| |||||||| || || ||||||||||||| |||| ||| || ||  |||| |||||||||||||||||||| | |||||||| ||    
T  4661583 attttcgtcacttatatttaaaatctcaattccattcaatatgacaccactgtattttgataatggttgaagcttgattgaaagatcaactctttcaatt 4661682  T
Q  227 tgagagt 233  Q
    |||||||    
T  4661683 tgagagt 4661689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 370 - 428
Target Start/End: Original strand, 4647569 - 4647625
Alignment:
Q  370 atcaaactcacaaaaatgtaaccttaccatataagtaaaaccaaaatcaacctcaaaat 428  Q
    |||||||||||||||  |||||||||||||||||||||||||| ||||||| |||||||    
T  4647569 atcaaactcacaaaa--gtaaccttaccatataagtaaaaccagaatcaacttcaaaat 4647625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 229 - 447
Target Start/End: Original strand, 4653422 - 4653640
Alignment:
Q  229 agagtacatagccacagcataatccttatgaacaggaactaaacgagcaccactccaataaagcacatcagctttttcttcagccaaactgttagctatg 328  Q
    ||||| ||||| |||| |||||||||||||||||||||  |||||||||   |||||  ||| ||||||||| |||  |||||||||    | |  |||     
T  4653422 agagtgcatagtcacaacataatccttatgaacaggaatcaaacgagcattgctccatgaaatcacatcagcatttggttcagccaagaaatcatgtata 4653521  T
Q  329 aaaatcttaaagactctatcacctttatttgttatatccggatcaaactcacaaaaatgtaaccttaccatataagtaaaaccaaaatcaacctcaaaat 428  Q
    || ||||  || ||||||||||||||||   | |||  |  |||||| ||||||||||||||||| ||||||||||||||     | ||||| || ||||    
T  4653522 aatatctggaaaactctatcacctttatccttgatacgccaatcaaattcacaaaaatgtaacctgaccatataagtaaatgttgagtcaacttcgaaat 4653621  T
Q  429 tccaagttacattgaaatc 447  Q
    |||||||||||||| ||||    
T  4653622 tccaagttacattgtaatc 4653640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 592 - 665
Target Start/End: Original strand, 4637082 - 4637155
Alignment:
Q  592 cacttgatacactttgtggatattctttctccaagtaacgaggagaatcattgtcccaattacgaaacatacct 665  Q
    |||||||||||||   ||| || ||||||||||||||| ||||| |||||||| ||||||| ||||||||||||    
T  4637082 cacttgatacactagatgggtactctttctccaagtaaagaggaaaatcattgccccaattgcgaaacatacct 4637155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 119 - 162
Target Start/End: Original strand, 4666697 - 4666740
Alignment:
Q  119 agattgttatttttgtcacttatttttaaaatttcgataccatt 162  Q
    |||||||||||||||||||||||||||||||| ||||| |||||    
T  4666697 agattgttatttttgtcacttatttttaaaatctcgattccatt 4666740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 505 - 553
Target Start/End: Original strand, 4636998 - 4637046
Alignment:
Q  505 aacttcttgaagttaagtaaacagcttctggtgcagtgtaatttggaat 553  Q
    ||||||||| ||||||||| ||| ||||||||||| |||||||||||||    
T  4636998 aacttcttgcagttaagtacacaacttctggtgcaatgtaatttggaat 4637046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 4647384 - 4647420
Alignment:
Q  193 ttgaagcttgattgaaagattagctctttcattttga 229  Q
    |||||||||||||||||||||| |||||||| |||||    
T  4647384 ttgaagcttgattgaaagattaactctttcaatttga 4647420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 2e-45; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 228 - 441
Target Start/End: Complemental strand, 18925936 - 18925723
Alignment:
Q  228 gagagtacatagccacagcataatccttatgaacaggaactaaacgagcaccactccaataaagcacatcagctttttcttcagccaaactgttagctat 327  Q
    |||||||||||| |||| |||||||||||||||||||||| | ||||||||||||||||| || ||||||||| |||  |||||||||| | | | ||||    
T  18925936 gagagtacatagtcacaacataatccttatgaacaggaaccatacgagcaccactccaatgaatcacatcagcatttcgttcagccaaattatcatctat 18925837  T
Q  328 gaaaatcttaaagactctatcacctttatttgttatatccggatcaaactcacaaaaatgtaaccttaccatataagtaaaaccaaaatcaacctcaaaa 427  Q
     ||||||| ||| ||||||||||||| |||  |||||| |  ||||||||| |||||||| || ||||||| |||||||||  || ||||||| ||||||    
T  18925836 aaaaatctgaaaaactctatcaccttgattctttatatgccaatcaaactcgcaaaaatgcaatcttaccaaataagtaaaggcagaatcaacttcaaaa 18925737  T
Q  428 ttccaagttacatt 441  Q
    ||||||||||||||    
T  18925736 ttccaagttacatt 18925723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 505 - 665
Target Start/End: Complemental strand, 18925696 - 18925539
Alignment:
Q  505 aacttcttgaagttaagtaaacagcttctggtgcagtgtaatttggaatagtattgtttaaatagtttagatgatcacttccataaacacttgatacact 604  Q
    ||||||||| ||||||||| ||| |||||||||| ||||| |||||||| |||||||||| |||||| |||| ||   |   | || || ||||||||||    
T  18925696 aacttcttgcagttaagtatacaacttctggtgccgtgtagtttggaatggtattgtttatatagttgagattatgtgt---aaaatcatttgatacact 18925600  T
Q  605 ttgtggatattctttctccaagtaacgaggagaatcattgtcccaattacgaaacatacct 665  Q
    | ||||||||| ||||||||||||||||||| |||| |||||||||| |||||||||||||    
T  18925599 tagtggatattgtttctccaagtaacgaggaaaatcgttgtcccaataacgaaacatacct 18925539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 119 - 166
Target Start/End: Complemental strand, 18926075 - 18926028
Alignment:
Q  119 agattgttatttttgtcacttatttttaaaatttcgataccattcaat 166  Q
    |||||||||||||||||||||||||| ||||| ||||| |||||||||    
T  18926075 agattgttatttttgtcacttattttcaaaatctcgatcccattcaat 18926028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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