View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0156_high_1 (Length: 434)
Name: NF0156_high_1
Description: NF0156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0156_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 103 - 406
Target Start/End: Complemental strand, 26335734 - 26335431
Alignment:
| Q |
103 |
tgcactttgtagtgttctaattgataatgatgctattagagggaagggtgaattcacataccaaggaagtcagttaaaactctgccgtcggagaatcttc |
202 |
Q |
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| T |
26335734 |
tgcactttgtagtgttccaattgataatgatgctattagagggaagggtgaattcacataccaaggaagtcagttaaaactatgccgtcggagaatcttc |
26335635 |
T |
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| Q |
203 |
cggacagctttcggggaaaggttatgccatatggggctctccatgaaccggatataggttttatggtgttgccggtatcaacatacgagtctccgaaaac |
302 |
Q |
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| T |
26335634 |
cggacggctttcggggaaaggttatgccatatggggctctccatgaaccggatataggttttatggtgttgccggtatcaacatacgagtctccgaaaac |
26335535 |
T |
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| Q |
303 |
aaacaannnnnnngaaggatgattgagatggcgagtggcctcaacttgcatctccatttgtcctacacaatgaacaagatgcacaattagtttaagatat |
402 |
Q |
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| T |
26335534 |
aaacaatttttttgaaggatgattgagatggcgagtggcctcaacttgcatatccatttgtcctacacaatgaacaagatgcacaattagtttaagatat |
26335435 |
T |
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| Q |
403 |
ttat |
406 |
Q |
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|||| |
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| T |
26335434 |
ttat |
26335431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 138 - 367
Target Start/End: Complemental strand, 26327747 - 26327518
Alignment:
| Q |
138 |
ttagagggaagggtgaattcacataccaaggaagtcagttaaaactctgccgtcggagaatcttccggacagctttcggggaaaggttatgccatatggg |
237 |
Q |
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| T |
26327747 |
ttagagggaagggtgaattcacataccaaggaagtcggttaaaactctaccgtcggagaatctcccaactggttttccgggaaaggttataccataaggt |
26327648 |
T |
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| Q |
238 |
gctctccatgaaccggatataggttttatggtgttgccggtatcaacatacgagtctccgaaaacaaacaannnnnnngaaggatgattgagatggcgag |
337 |
Q |
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| T |
26327647 |
actttccatgaatcaaatatggtttttatggagttgccggtatcaacatacgaatctccaaaaacaaacaatttttttgaaggatgattgagatggcgag |
26327548 |
T |
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| Q |
338 |
tggcctcaacttgcatctccatttgtccta |
367 |
Q |
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| T |
26327547 |
tggcctcaacttgcatctccatttgtccta |
26327518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 161 - 308
Target Start/End: Complemental strand, 26321184 - 26321037
Alignment:
| Q |
161 |
taccaaggaagtcagttaaaactctgccgtcggagaatcttccggacagctttcggggaaaggttatgccatatggggctctccatgaaccggatatagg |
260 |
Q |
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|||||| |||||||||||||||||| ||||| ||||||||||| | | |||| |||||||||||||||||| || || |||||||||| | | || |
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| T |
26321184 |
taccaatgaagtcagttaaaactctaccgtccgagaatcttcctgcaggttttccgggaaaggttatgccataaggttctttccatgaaccaggtttact |
26321085 |
T |
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| Q |
261 |
ttttatggtgttgccggtatcaacatacgagtctccgaaaacaaacaa |
308 |
Q |
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| T |
26321084 |
tttttggctgttgccggtatcaacatacgagtctccgaaaacgaacaa |
26321037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 26335836 - 26335788
Alignment:
| Q |
1 |
aattccaaacctatcacttttcatattaaagctagaaaagtagagacac |
49 |
Q |
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| T |
26335836 |
aattccaaacctatcatttttcatattaaagctagaaaagtagagacac |
26335788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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