View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0156_high_2 (Length: 424)

Name: NF0156_high_2
Description: NF0156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0156_high_2
NF0156_high_2
[»] chr3 (23 HSPs)
chr3 (20-329)||(6259166-6259475)
chr3 (59-329)||(13270348-13270618)
chr3 (34-329)||(6245254-6245549)
chr3 (58-329)||(6168858-6169129)
chr3 (134-327)||(6265660-6265853)
chr3 (70-329)||(6882471-6882730)
chr3 (70-328)||(6142254-6142512)
chr3 (99-311)||(6591188-6591400)
chr3 (134-308)||(8568840-8569014)
chr3 (152-288)||(7750007-7750143)
chr3 (70-329)||(6900055-6900314)
chr3 (141-329)||(5298673-5298861)
chr3 (99-287)||(6721926-6722114)
chr3 (207-329)||(5267998-5268120)
chr3 (48-270)||(6917127-6917349)
chr3 (162-287)||(8454635-8454760)
chr3 (222-308)||(7587835-7587921)
chr3 (162-273)||(8589724-8589835)
chr3 (143-305)||(5250135-5250297)
chr3 (162-287)||(6520085-6520210)
chr3 (244-325)||(6838903-6838984)
chr3 (207-287)||(6735971-6736051)
chr3 (142-174)||(8471658-8471690)
[»] chr1 (2 HSPs)
chr1 (131-329)||(35140226-35140431)
chr1 (27-90)||(35140129-35140192)
[»] chr7 (1 HSPs)
chr7 (162-308)||(6573218-6573364)
[»] chr4 (1 HSPs)
chr4 (207-329)||(25242122-25242247)


Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 20 - 329
Target Start/End: Complemental strand, 6259475 - 6259166
Alignment:
Q  20 atatgtcggagtatttactacctctttgtaaccagggatcttttcgaggcaagataattgtgacgacaaatgataaagcagtagcatcagtcatgagatc 119  Q
    |||||| ||||  |||||||| ||||| |||||||||||   |||||||||| || |||||||||||||||||||||| |||||||||||||||||||||    
T  6259475 atatgttggagcgtttactacttctttttaaccagggatacattcgaggcaaaatgattgtgacgacaaatgataaagaagtagcatcagtcatgagatc 6259376  T
Q  120 gacccagataatttatttaaggcaattggagaagagtgactcttggagtttatttgtgagatatgcttttgaatgcaggaatacgtttgaatatccaaat 219  Q
     |||| ||||||| || |||||||||||||| ||||||||||||||| ||||||||| ||| ||||||||||| ||||||||| ||||||||||||||||    
T  6259375 cacccggataattcatctaaggcaattggaggagagtgactcttggaatttatttgtaagacatgcttttgaaggcaggaatatgtttgaatatccaaat 6259276  T
Q  220 cttgaatcgatcggtatgaaaatagtagaaaaatgtgggggtttgcctttagctctgaaaacattggggatgctcttgcaaagaaaattctccgaaaatg 319  Q
    |||||||||||||| | |||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||| ||||| |||||||    
T  6259275 cttgaatcgatcggcaagaaaatagtagaaaaatgtggggggttgccttcagctctgaaaacattggggattctcttgcaaagaaagttctctgaaaatg 6259176  T
Q  320 aatgggttaa 329  Q
    ||||||||||    
T  6259175 aatgggttaa 6259166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 59 - 329
Target Start/End: Original strand, 13270348 - 13270618
Alignment:
Q  59 cttttcgaggcaagataattgtgacgacaaatgataaagcagtagcatcagtcatgagatcgacccagataatttatttaaggcaattggagaagagtga 158  Q
    |||||||||| ||||| || ||||||||| ||||||| | ||||||||||||||||||||| | || ||||||| ||||||||||||||||| |||||||    
T  13270348 cttttcgaggtaagattatcgtgacgacacatgataatgaagtagcatcagtcatgagatccaaccggataattcatttaaggcaattggaggagagtga 13270447  T
Q  159 ctcttggagtttatttgtgagatatgcttttgaatgcaggaatacgtttgaatatccaaatcttgaatcgatcggtatgaaaatagtagaaaaatgtggg 258  Q
    |||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  13270448 ctcttggagtttatttgtgagacatgcttttgaaggcaggaatatgtttgaatatccaaatcttgaatccatcggtatgagaatagtagaaaaatgtggg 13270547  T
Q  259 ggtttgcctttagctctgaaaacattggggatgctcttgcaaagaaaattctccgaaaatgaatgggttaa 329  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| | ||||||||||    
T  13270548 ggtttgcctttagctctgaaaacattggggattctcttgcaaagaaaattctctgaaattaaatgggttaa 13270618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 34 - 329
Target Start/End: Complemental strand, 6245549 - 6245254
Alignment:
Q  34 ttactacctctttgtaaccagggatcttttcgaggcaagataattgtgacgacaaatgataaagcagtagcatcagtcatgagatcgacccagataattt 133  Q
    ||||||| | ||| |||||||| | ||| |||||| | ||| || ||||| ||| ||||||||| ||| ||||||||||||||||  ||||||||| ||     
T  6245549 ttactacttatttttaaccaggaaccttctcgagggaggatgatagtgacaacacatgataaagaagttgcatcagtcatgagatacacccagatacttc 6245450  T
Q  134 atttaaggcaattggagaagagtgactcttggagtttatttgtgagatatgcttttgaatgcaggaatacgtttgaatatccaaatcttgaatcgatcgg 233  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||| ||||||||| ||||||||||||||||||||||||||| ||    
T  6245449 atttaaggcaattggaggagagtgactcttggagtttatttgtaagacatgcttttgaaggcaggaatatgtttgaatatccaaatcttgaatcgattgg 6245350  T
Q  234 tatgaaaatagtagaaaaatgtgggggtttgcctttagctctgaaaacattggggatgctcttgcaaagaaaattctccgaaaatgaatgggttaa 329  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||    
T  6245349 tatgaaaatagtagaaaaatgtggggggtcgcctttagctctgaaaacattggggattctcttgcaaagaagattctctgaaaatgaatgggttaa 6245254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 58 - 329
Target Start/End: Complemental strand, 6169129 - 6168858
Alignment:
Q  58 tcttttcgaggcaagataattgtgacgacaaatgataaagcagtagcatcagtcatgagatcgacccagataatttatttaaggcaattggagaagagtg 157  Q
    ||||||||||| | ||| || ||||| ||| ||||||||| ||| ||||||||||||||||| ||||||||| || ||||||||||||||||| ||||||    
T  6169129 tcttttcgagggaggatgatagtgacaacacatgataaagaagttgcatcagtcatgagatccacccagatacttcatttaaggcaattggaggagagtg 6169030  T
Q  158 actcttggagtttatttgtgagatatgcttttgaatgcaggaatacgtttgaatatccaaatcttgaatcgatcggtatgaaaatagtagaaaaatgtgg 257  Q
    ||||||||||||||||||| ||| ||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6169029 actcttggagtttatttgtaagacatgcttttgaaggcaggaatatgtttgaatatccaaatcttgaatcgattggtatgaaaatagtagaaaaatgtgg 6168930  T
Q  258 gggtttgcctttagctctgaaaacattggggatgctcttgcaaagaaaattctccgaaaatgaatgggttaa 329  Q
    ||| | |||||| ||||| |||||||||||||| ||||||||||||| |||||| |||||||||||||||||    
T  6168929 ggggtcgccttttgctctaaaaacattggggattctcttgcaaagaagattctctgaaaatgaatgggttaa 6168858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 134 - 327
Target Start/End: Complemental strand, 6265853 - 6265660
Alignment:
Q  134 atttaaggcaattggagaagagtgactcttggagtttatttgtgagatatgcttttgaatgcaggaatacgtttgaatatccaaatcttgaatcgatcgg 233  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||||||||| || ||| ||||  ||||||||||||||||||||||| ||| ||    
T  6265853 atttaaagcaattggaggagagtgactcttggagtttatttgtgagatatgcttttcaaggcaagaatgtgtttgaatatccaaatcttgaattgattgg 6265754  T
Q  234 tatgaaaatagtagaaaaatgtgggggtttgcctttagctctgaaaacattggggatgctcttgcaaagaaaattctccgaaaatgaatgggtt 327  Q
     | ||||||||||| |||||||||||| ||||||||| ||||||||||||||||||| ||||| |||||||||||||| | || ||||||||||    
T  6265753 caagaaaatagtagcaaaatgtggggggttgcctttaactctgaaaacattggggattctcttccaaagaaaattctctgtaactgaatgggtt 6265660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 70 - 329
Target Start/End: Complemental strand, 6882730 - 6882471
Alignment:
Q  70 aagataattgtgacgacaaatgataaagcagtagcatcagtcatgagatcgacccagataatttatttaaggcaattggagaagagtgactcttggagtt 169  Q
    ||||| |||||||| ||| |||| || | |||||||||| |||||||||| |||| | ||||  | |||| |||||||||| ||||||| ||||||||||    
T  6882730 aagatgattgtgacaacacatgacaaggaagtagcatcaatcatgagatccacccggctaatacacttaaagcaattggaggagagtgattcttggagtt 6882631  T
Q  170 tatttgtgagatatgcttttgaatgcaggaatacgtttgaatatccaaatcttgaatcgatcggtatgaaaatagtagaaaaatgtgggggtttgccttt 269  Q
    |||||||||||||||||||| || | ||||||   |||||||||||||||||||||| ||| || | ||||||||||||||| |||||||| ||||||||    
T  6882630 tatttgtgagatatgcttttcaaggtaggaatgtatttgaatatccaaatcttgaattgataggcaagaaaatagtagaaaagtgtggggggttgccttt 6882531  T
Q  270 agctctgaaaacattggggatgctcttgcaaagaaaattctccgaaaatgaatgggttaa 329  Q
    ||| ||||||||||||||||  ||||||| || ||||||||| |||  ||||||| ||||    
T  6882530 agcactgaaaacattggggaatctcttgctaaaaaaattctctgaatctgaatggattaa 6882471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 70 - 328
Target Start/End: Complemental strand, 6142512 - 6142254
Alignment:
Q  70 aagataattgtgacgacaaatgataaagcagtagcatcagtcatgagatcgacccagataatttatttaaggcaattggagaagagtgactcttggagtt 169  Q
    ||||| |||||||| ||| |||| || | ||||||||||  |||||| ||  | | |||| || |||| | |||||||||| ||||| ||||||||||||    
T  6142512 aagatgattgtgacaacacatgacaaggaagtagcatcaagcatgagttccgctcggatacttcatttgaagcaattggaggagagtaactcttggagtt 6142413  T
Q  170 tatttgtgagatatgcttttgaatgcaggaatacgtttgaatatccaaatcttgaatcgatcggtatgaaaatagtagaaaaatgtgggggtttgccttt 269  Q
    ||||||||||||||||||||  | | ||||||  ||||| ||||||||||||||||| ||| || | ||||||||||||||| |||||||| ||||| ||    
T  6142412 tatttgtgagatatgcttttccaggtaggaatgtgtttggatatccaaatcttgaattgataggcaagaaaatagtagaaaagtgtggggggttgccatt 6142313  T
Q  270 agctctgaaaacattggggatgctcttgcaaagaaaattctccgaaaatgaatgggtta 328  Q
    ||||||||||||||||||||| |||||| | ||||||||||| |||| |||||||||||    
T  6142312 agctctgaaaacattggggattctcttgaatagaaaattctctgaaattgaatgggtta 6142254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 99 - 311
Target Start/End: Original strand, 6591188 - 6591400
Alignment:
Q  99 agtagcatcagtcatgagatcgacccagataatttatttaaggcaattggagaagagtgactcttggagtttatttgtgagatatgcttttgaatgcagg 198  Q
    |||||||||| ||||| |||| |||||| || || ||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||  | | |||    
T  6591188 agtagcatcaatcatgggatccacccagctagttgatttaaatcaattggaggagagtgactcttggagtttatttgtgagatatgcttttcgaggtagg 6591287  T
Q  199 aatacgtttgaatatccaaatcttgaatcgatcggtatgaaaatagtagaaaaatgtgggggtttgcctttagctctgaaaacattggggatgctcttgc 298  Q
     ||  |||||||||||||| ||||| || ||| || | ||||||||||||||| ||||||||  | ||||||||||| |||||| |||||   || ||||    
T  6591288 gatgtgtttgaatatccaactcttgtattgataggcaagaaaatagtagaaaagtgtggggggattcctttagctctaaaaacaatggggcaacttttgc 6591387  T
Q  299 aaagaaaattctc 311  Q
    ||| |||||||||    
T  6591388 aaaaaaaattctc 6591400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 134 - 308
Target Start/End: Original strand, 8568840 - 8569014
Alignment:
Q  134 atttaaggcaattggagaagagtgactcttggagtttatttgtgagatatgcttttgaatgcaggaatacgtttgaatatccaaatcttgaatcgatcgg 233  Q
    |||||| |||||||||| |||  || | ||||||||||||||||| | |||||||| || | | ||||  ||||||||||||||||||||||||||| ||    
T  8568840 atttaaagcaattggaggagaaagattgttggagtttatttgtgaaacatgcttttcaaggaaagaatgtgtttgaatatccaaatcttgaatcgattgg 8568939  T
Q  234 tatgaaaatagtagaaaaatgtgggggtttgcctttagctctgaaaacattggggatgctcttgcaaagaaaatt 308  Q
     | ||| || |||||||| ||||| || |||||||||||| |||||||||||||||  |||||||||||||||||    
T  8568940 aaagaagattgtagaaaagtgtggagggttgcctttagctgtgaaaacattggggaatctcttgcaaagaaaatt 8569014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 152 - 288
Target Start/End: Complemental strand, 7750143 - 7750007
Alignment:
Q  152 agagtgactcttggagtttatttgtgagatatgcttttgaatgcaggaatacgtttgaatatccaaatcttgaatcgatcggtatgaaaatagtagaaaa 251  Q
    |||||||||||||||| |||||||||    ||||||||    ||| |||||  ||||||||||||||||| || |||||||| | |||||||||||||||    
T  7750143 agagtgactcttggagcttatttgtgcatcatgcttttttgggcaagaatatatttgaatatccaaatctcgagtcgatcggcaagaaaatagtagaaaa 7750044  T
Q  252 atgtgggggtttgcctttagctctgaaaacattgggg 288  Q
     |||||||| ||||||||||||||  |||||||||||    
T  7750043 gtgtggggggttgcctttagctctagaaacattgggg 7750007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 70 - 329
Target Start/End: Complemental strand, 6900314 - 6900055
Alignment:
Q  70 aagataattgtgacgacaaatgataaagcagtagcatcagtcatgagatcgacccagataatttatttaaggcaattggagaagagtgactcttggagtt 169  Q
    ||||| |||||||| ||| ||||||  | |||||||||| |||| ||||| || ||  || || ||||||  |||||| || ||||||| | ||||||||    
T  6900314 aagatgattgtgacaacacatgatatggaagtagcatcaatcataagatctacgcaactacttcatttaaaacaattgaaggagagtgattgttggagtt 6900215  T
Q  170 tatttgtgagatatgcttttgaatgcaggaatacgtttgaatatccaaatcttgaatcgatcggtatgaaaatagtagaaaaatgtgggggtttgccttt 269  Q
    ||||||||| | |||| |||  | | || ||    ||||||||||||||||| |||| ||| || |   |||||||| |||| ||||  || ||||||||    
T  6900214 tatttgtgaaacatgcctttctaggaagaaaagtatttgaatatccaaatctggaattgataggcaaacaaatagtacaaaagtgtgaagggttgccttt 6900115  T
Q  270 agctctgaaaacattggggatgctcttgcaaagaaaattctccgaaaatgaatgggttaa 329  Q
    ||||||||||||||||||||  |||||| ||||||| ||||| |||  ||| ||||||||    
T  6900114 agctctgaaaacattggggaatctcttggaaagaaagttctctgaacctgattgggttaa 6900055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 141 - 329
Target Start/End: Complemental strand, 5298861 - 5298673
Alignment:
Q  141 gcaattggagaagagtgactcttggagtttatttgtgagatatgcttttgaatgcaggaatacgtttgaatatccaaatcttgaatcgatcggtatgaaa 240  Q
    ||||||| |||||||||| | ||||||| | ||||||||| | |||||| |  |||  ||| |   ||||||||||||||||||||| || || | ||||    
T  5298861 gcaattgaagaagagtgaatgttggagtatgtttgtgagacacgcttttcacggcacaaatgcaagtgaatatccaaatcttgaatcaattggcaagaaa 5298762  T
Q  241 atagtagaaaaatgtgggggtttgcctttagctctgaaaacattggggatgctcttgcaaagaaaattctccgaaaatgaatgggttaa 329  Q
    || |||||||| ||||| || |||||| ||||| | ||| |||||||||  ||||||| ||||||||||||  ||  ||||||||||||    
T  5298761 atcgtagaaaagtgtggagggttgcctctagctgtaaaagcattggggaatctcttgcgaagaaaattctctcaacgtgaatgggttaa 5298673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 99 - 287
Target Start/End: Original strand, 6721926 - 6722114
Alignment:
Q  99 agtagcatcagtcatgagatcgacccagataatttatttaaggcaattggagaagagtgactcttggagtttatttgtgagatatgcttttgaatgcagg 198  Q
    |||||||||| |||||||||| |||| | || || |||||   ||||||||| | ||||||||||||||  |||||||||   ||||||||  | |||||    
T  6721926 agtagcatcaatcatgagatccacccggctacttcatttatatcaattggaggaaagtgactcttggaggatatttgtgaatcatgcttttcgaggcagg 6722025  T
Q  199 aatacgtttgaatatccaaatcttgaatcgatcggtatgaaaatagtagaaaaatgtgggggtttgcctttagctctgaaaacattggg 287  Q
    |||  |||||| | |||||||||||| ||| |    | |||| | | |||||| ||||| || ||||||||||||||||||||||||||    
T  6722026 aatttgtttgattttccaaatcttgagtcggttatcaagaaagtggcagaaaagtgtggagggttgcctttagctctgaaaacattggg 6722114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 207 - 329
Target Start/End: Complemental strand, 5268120 - 5267998
Alignment:
Q  207 tgaatatccaaatcttgaatcgatcggtatgaaaatagtagaaaaatgtgggggtttgcctttagctctgaaaacattggggatgctcttgcaaagaaaa 306  Q
    |||||| |||||||||||||| || || | |||||||||||| || ||||| || || ||||||||| | ||||| ||||| |  ||||||| |||||||    
T  5268120 tgaatacccaaatcttgaatcaattggaaagaaaatagtagataagtgtggagggttacctttagctgtaaaaactttgggaaatctcttgcgaagaaaa 5268021  T
Q  307 ttctccgaaaatgaatgggttaa 329  Q
    |||||  || |||||||||||||    
T  5268020 ttctctcaacatgaatgggttaa 5267998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 48 - 270
Target Start/End: Complemental strand, 6917349 - 6917127
Alignment:
Q  48 taaccagggatcttttcgaggcaagataattgtgacgacaaatgataaagcagtagcatcagtcatgagatcgacccagataatttatttaaggcaattg 147  Q
    |||||| ||||||| || ||||||||||||  |||| ||| |||| || | |||||||||| |||||||||| |||| | || || |||||| ||||||     
T  6917349 taaccatggatcttctcaaggcaagataatcttgacaacatatgacaaggaagtagcatcaatcatgagatccacccggctacttgatttaaagcaatta 6917250  T
Q  148 gagaagagtgactcttggagtttatttgtgagatatgcttttgaatgcaggaatacgtttgaatatccaaatcttgaatcgatcggtatgaaaatagtag 247  Q
    ||  ||||||  | | ||||||||||||||||  |||||||| |    |||||| ||  | || ||||||||||||||   || || | |||||||||||    
T  6917249 gaagagagtggttgtaggagtttatttgtgagtcatgcttttcatgataggaatgcgagtcaacatccaaatcttgaaattattggcaagaaaatagtag 6917150  T
Q  248 aaaaatgtgggggtttgccttta 270  Q
    | |||||||| || |||||||||    
T  6917149 acaaatgtggagggttgccttta 6917127  T

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Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 287
Target Start/End: Complemental strand, 8454760 - 8454635
Alignment:
Q  162 ttggagtttatttgtgagatatgcttttgaatgcaggaatacgtttgaatatccaaatcttgaatcgatcggtatgaaaatagtagaaaaatgtgggggt 261  Q
    ||||||||||||||||| | |||||||| || | | || |  || |||||||||||||||||||||  | ||||  |||||||| ||||| ||||| ||     
T  8454760 ttggagtttatttgtgacacatgcttttcaaggaaagagtgtgtctgaatatccaaatcttgaatcagttggtagaaaaatagtggaaaagtgtggaggg 8454661  T
Q  262 ttgcctttagctctgaaaacattggg 287  Q
    |||||||||||| | ||| |||||||    
T  8454660 ttgcctttagctataaaatcattggg 8454635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 308
Target Start/End: Complemental strand, 7587921 - 7587835
Alignment:
Q  222 tgaatcgatcggtatgaaaatagtagaaaaatgtgggggtttgcctttagctctgaaaacattggggatgctcttgcaaagaaaatt 308  Q
    ||||||||| || | ||| || ||||| |||||||| || |||||| ||||| |||||||||||||||  ||| |||||||||||||    
T  7587921 tgaatcgattggcaagaagattgtagagaaatgtggagggttgcctctagctgtgaaaacattggggaaactcctgcaaagaaaatt 7587835  T

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Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 273
Target Start/End: Complemental strand, 8589835 - 8589724
Alignment:
Q  162 ttggagtttatttgtgagatatgcttttgaatgcaggaatacgtttgaatatccaaatcttgaatcgatcggtatgaaaatagtagaaaaatgtgggggt 261  Q
    ||||||||||||||||| | |||||||| || | | ||||  || ||||||||||||||||||||| |  || | ||||||| | || || ||||| ||     
T  8589835 ttggagtttatttgtgacacatgcttttcaaggaaagaatgtgtgtgaatatccaaatcttgaatcaactggcaagaaaatactggataagtgtggaggg 8589736  T
Q  262 ttgcctttagct 273  Q
    ||||||||||||    
T  8589735 ttgcctttagct 8589724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 305
Target Start/End: Complemental strand, 5250297 - 5250135
Alignment:
Q  143 aattggagaagagtgactcttggagtttatttgtgagatatgcttttgaatgcaggaatacgtttgaatatccaaatcttgaatcgatcggtatgaaaat 242  Q
    ||||| || ||||||| | ||||||| | ||||||||| |||||||| |  | |||||| |   ||||||||||||||||||||| || |||| ||||||    
T  5250297 aattgaaggagagtgaatgttggagtatgtttgtgagacatgctttttacggaaggaatgcaagtgaatatccaaatcttgaatctattggtaagaaaat 5250198  T
Q  243 agtagaaaaatgtgggggtttgcctttagctctgaaaacattggggatgctcttgcaaagaaa 305  Q
      |||  || ||||| || ||||| |||||| | ||||| ||||| |  ||||||| ||||||    
T  5250197 tataggcaagtgtggagggttgccattagctgtaaaaactttgggaaatctcttgcgaagaaa 5250135  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 287
Target Start/End: Original strand, 6520085 - 6520210
Alignment:
Q  162 ttggagtttatttgtgagatatgcttttgaatgcaggaatacgtttgaatatccaaatcttgaatcgatcggtatgaaaatagtagaaaaatgtgggggt 261  Q
    |||||||||||||| || | |||||||| || ||| |  |  || ||| |||||||| |||||| |||| || ||||||||||| || || ||||| ||     
T  6520085 ttggagtttatttgagacacatgcttttcaaggcatgcgtgtgtgtgactatccaaaacttgaaacgattggcatgaaaatagtggacaagtgtggtggg 6520184  T
Q  262 ttgcctttagctctgaaaacattggg 287  Q
    |||||||||||| | ||| |||||||    
T  6520185 ttgcctttagctataaaatcattggg 6520210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 325
Target Start/End: Original strand, 6838903 - 6838984
Alignment:
Q  244 gtagaaaaatgtgggggtttgcctttagctctgaaaacattggggatgctcttgcaaagaaaattctccgaaaatgaatggg 325  Q
    ||||| || ||||| || |||||||||||| |||||||||||||||  |||||||  | |||||||||  || |||||||||    
T  6838903 gtagataagtgtggagggttgcctttagctgtgaaaacattggggaacctcttgcggaaaaaattctctaaacatgaatggg 6838984  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 287
Target Start/End: Complemental strand, 6736051 - 6735971
Alignment:
Q  207 tgaatatccaaatcttgaatcgatcggtatgaaaatagtagaaaaatgtgggggtttgcctttagctctgaaaacattggg 287  Q
    ||||||||||||||||||||| || || | ||||||||| || || ||||| || |||||| ||||| | ||| |||||||    
T  6736051 tgaatatccaaatcttgaatcaattgggaagaaaatagtggagaagtgtggagggttgcctctagctataaaatcattggg 6735971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 174
Target Start/End: Complemental strand, 8471690 - 8471658
Alignment:
Q  142 caattggagaagagtgactcttggagtttattt 174  Q
    ||||||||||||||||||| |||||||||||||    
T  8471690 caattggagaagagtgactgttggagtttattt 8471658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 123; Significance: 5e-63; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 131 - 329
Target Start/End: Original strand, 35140226 - 35140431
Alignment:
Q  131 tttatttaaggcaattggagaagagtgactcttg-gagtttatttgtgagatatgcttttgaatgcaggaatacgtttgaatatccaaatcttgaatcga 229  Q
    |||||||||||||||||||| ||||||||||||  |||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||| |||    
T  35140226 tttatttaaggcaattggaggagagtgactcttaagagtttatttgtgagatatggttttgaaggcaggaatatgtttgaatatccaaatcttgaaacga 35140325  T
Q  230 tcggtatgaaaatagtagaaaaatgt------gggggtttgcctttagctctgaaaacattggggatgctcttgcaaagaaaattctccgaaaatgaatg 323  Q
    | ||||||||| ||||||||||||||      ||||| ||  ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  35140326 ttggtatgaaactagtagaaaaatgtggggtgggggggttatctttagctctgaaaacactggggattctcttgcaaagaaaattctccgaaaatgaatg 35140425  T
Q  324 ggttaa 329  Q
    ||||||    
T  35140426 ggttaa 35140431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 90
Target Start/End: Original strand, 35140129 - 35140192
Alignment:
Q  27 ggagtatttactacctctttgtaaccagggatcttttcgaggcaagataattgtgacgacaaat 90  Q
    |||| ||||||||| | ||| |||||||||||||||| |||||||||| || |||| |||||||    
T  35140129 ggagcatttactacttttttttaaccagggatctttttgaggcaagatgatcgtgatgacaaat 35140192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 162 - 308
Target Start/End: Original strand, 6573218 - 6573364
Alignment:
Q  162 ttggagtttatttgtgagatatgcttttgaatgcaggaatacgtttgaatatccaaatcttgaatcgatcggtatgaaaatagtagaaaaatgtgggggt 261  Q
    ||||||||||||||||| | ||||||||  | | |  |||  |||||| |||||||||||||||||||| || | | | || ||||| |||||||| ||     
T  6573218 ttggagtttatttgtgaaacatgcttttcgaggaaaaaatgtgtttgactatccaaatcttgaatcgattggcaaggagattgtagacaaatgtggaggg 6573317  T
Q  262 ttgcctttagctctgaaaacattggggatgctcttgcaaagaaaatt 308  Q
    |||||||||||  |||||||||||||||  |||||||||||||||||    
T  6573318 ttgcctttagccgtgaaaacattggggaatctcttgcaaagaaaatt 6573364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 207 - 329
Target Start/End: Original strand, 25242122 - 25242247
Alignment:
Q  207 tgaatatccaaatcttgaatcgatcggtatgaaaata---gtagaaaaatgtgggggtttgcctttagctctgaaaacattggggatgctcttgcaaaga 303  Q
    ||||||||||||||||| ||| || || | |||||||   |||||||| ||||| |  |||||||||||| | ||||||  |||||  ||||||| ||||    
T  25242122 tgaatatccaaatcttgcatcaattggcaagaaaataatagtagaaaagtgtggagcgttgcctttagctgtaaaaacaacggggaatctcttgcgaaga 25242221  T
Q  304 aaattctccgaaaatgaatgggttaa 329  Q
    ||||||||  || |||||||||||||    
T  25242222 aaattctctcaacatgaatgggttaa 25242247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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