View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0156_low_1 (Length: 594)
Name: NF0156_low_1
Description: NF0156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0156_low_1 |
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| [»] scaffold0135 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 122; Significance: 3e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 94 - 227
Target Start/End: Original strand, 41653178 - 41653311
Alignment:
| Q |
94 |
aatagataatcctagattggaggatatgtttaagaagtttgggaatattttgtcaagtaaagttgtaatgtctgaggatgggaagagtaaaggatatggc |
193 |
Q |
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| T |
41653178 |
aatagataattctggattagaggatatgtttaagaagtttgggaatattttgtcaagtaaagttgtaatgtctgaggatgggaagagtaaaggatatggc |
41653277 |
T |
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| Q |
194 |
tttgttcaatttgaaacagaggaatctgcaaatg |
227 |
Q |
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| T |
41653278 |
tttgttcaatttgaaacagaggaatctgcaaatg |
41653311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 301 - 499
Target Start/End: Complemental strand, 9200430 - 9200228
Alignment:
| Q |
301 |
taagtaagatctggattttgatttataaaaattcatgcta-----tattatttcgaacatttaatttgatgtttaaattataaacaggtaacagcaaaga |
395 |
Q |
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| T |
9200430 |
taagtaatatatggattttgttttataaaaactcatgctactgtatatcattttgaacatttgatttgatgtttaaagtataaacatgtaa-agcaaaga |
9200332 |
T |
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| Q |
396 |
tacattctatgtttacaagggagtttgggtatcaaattgctacgtatgtaaacttgtgtgatccaaacagaaacgaacatgaagttatgatagagaaaag |
495 |
Q |
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||| |||||||||||||||||||||||||||||||||| |||| ||||||| ||| ||||||||||| ||||||||||||||||||||||||||| || |
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| T |
9200331 |
taccttctatgtttacaagggagtttgggtatcaaatttctacatatgtaacattgagtgatccaaacgaaaacgaacatgaagttatgatagagaagag |
9200232 |
T |
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| Q |
496 |
gtat |
499 |
Q |
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|||| |
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| T |
9200231 |
gtat |
9200228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 404 - 499
Target Start/End: Complemental strand, 9202085 - 9201990
Alignment:
| Q |
404 |
atgtttacaagggagtttgggtatcaaattgctacgtatgtaaacttgtgtgatccaaacagaaacgaacatgaagttatgatagagaaaaggtat |
499 |
Q |
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|||||||||||||||||||||||| ||||| |||| ||||||| ||| ||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
9202085 |
atgtttacaagggagtttgggtattaaatttctacatatgtaacattgagtgatccaaacggaaacgaacatgaagttatgatagagaagaggtat |
9201990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0135 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold0135
Description:
Target: scaffold0135; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 404 - 499
Target Start/End: Complemental strand, 167 - 72
Alignment:
| Q |
404 |
atgtttacaagggagtttgggtatcaaattgctacgtatgtaaacttgtgtgatccaaacagaaacgaacatgaagttatgatagagaaaaggtat |
499 |
Q |
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|||||||||||||||||||||||| ||||| |||| ||||||| ||| ||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
167 |
atgtttacaagggagtttgggtattaaatttctacatatgtaacattgagtgatccaaacggaaacgaacatgaagttatgatagagaagaggtat |
72 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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