View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0156_low_12 (Length: 251)
Name: NF0156_low_12
Description: NF0156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0156_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 26335856 - 26336096
Alignment:
| Q |
1 |
tgttgtgcagcaaagtatttgggattgagatcaccaatcattcacaaattatggtataacaacatagtgcctgaacatgatttgaagtatgggatgaact |
100 |
Q |
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| T |
26335856 |
tgttgtgcagcaaagtatttgggattgagatcaccaatcattcacaaattatggtataacaacatagtgcctgaacatgatttgaagtatgggatgaact |
26335955 |
T |
|
| Q |
101 |
ttgcatatggtggtacaggtgtatttgatacattttcttcatgaccaaatatgacaacccaaattgattccttcaaccaagtcatccnnnnnnntgtcta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26335956 |
ttgcatatggtggtacaggtgtatttgatacattttcttcatgaccaaatatgacaacccaaattgattccttcaaccaagtcatccaaaaaaatgtcta |
26336055 |
T |
|
| Q |
201 |
tactctctcagatatcaccaattctattgcttatgtctctg |
241 |
Q |
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| T |
26336056 |
tactctctcagatatcaccaattctattgcttatgtctctg |
26336096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 5 - 239
Target Start/End: Original strand, 26322849 - 26323077
Alignment:
| Q |
5 |
gtgcagcaaagtatttgggattgagatcaccaatcattcacaaattatggtataacaacatagtgcctgaacatgatttgaagtatgggatgaactttgc |
104 |
Q |
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| T |
26322849 |
gtgcagccaagtatttgagattgagatcaccaatccctcacaaattcagg------aacattgtgtctaaacattatttgaagtatgggatgaactttgc |
26322942 |
T |
|
| Q |
105 |
atatggtggtacaggtgtatttgatacattttcttcatgaccaaatatgacaacccaaattgattccttcaaccaagtcatccnnnnnnntgtctatact |
204 |
Q |
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| T |
26322943 |
atatggtggcacaggtgtatttgatacatttacttcaggaccaaatatgacagcccaaatcgattccttcaaccaactcattcaagaaaatgtctatact |
26323042 |
T |
|
| Q |
205 |
ctctcagatatcaccaattctattgcttatgtctc |
239 |
Q |
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| T |
26323043 |
ccttcagatctcagcaaagctattgcttatgtctc |
26323077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 3 - 241
Target Start/End: Original strand, 26328147 - 26328385
Alignment:
| Q |
3 |
ttgtgcagcaaagtatttgggattgagatcaccaatcattcacaaattatggtataacaacatagtgcctgaacatgatttgaagtatgggatgaacttt |
102 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||||| |||||| |||||| ||| || | ||||||| | ||||||||||||||||||||||||||| |
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| T |
26328147 |
ttgtgcagccaagtatttgggattgaaatcaccaatcactcacaatttatggaatactaatacagtgcctaagcatgatttgaagtatgggatgaacttt |
26328246 |
T |
|
| Q |
103 |
gcatatggtggtacaggtgtatttgatacattttcttcatgaccaaatatgacaacccaaattgattccttcaaccaagtcatccnnnnnnntgtctata |
202 |
Q |
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|| ||||||||||||||||||||||| | || |||| || |||||||| ||||||| ||||| ||||||| | | || |||| | ||| || | |
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| T |
26328247 |
gcctatggtggtacaggtgtatttgaaatatcttctacaggaccaaatgtgacaacacaaatcaattccttaatcaaactcattcaagaaaatgtataca |
26328346 |
T |
|
| Q |
203 |
ctctctcagatatcaccaattctattgcttatgtctctg |
241 |
Q |
| |
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||| ||||||||||||||| ||||| ||||||||||||| |
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| T |
26328347 |
ctccctcagatatcaccaaatctatagcttatgtctctg |
26328385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 131
Target Start/End: Complemental strand, 42224184 - 42224133
Alignment:
| Q |
80 |
atttgaagtatgggatgaactttgcatatggtggtacaggtgtatttgatac |
131 |
Q |
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||||||| ||||| ||||||||||||| ||||||||| ||||| |||||||| |
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|
| T |
42224184 |
atttgaaatatggaatgaactttgcatttggtggtactggtgtgtttgatac |
42224133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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