View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0156_low_7 (Length: 417)
Name: NF0156_low_7
Description: NF0156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0156_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 5 - 334
Target Start/End: Original strand, 1884257 - 1884586
Alignment:
| Q |
5 |
taaaatcaaaattcgttgatgtttcaacaaaataacgatatgaccttaattttgtcaaactcgcaatgatttcaaacgttatacttatttttattatttt |
104 |
Q |
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| T |
1884257 |
taaaatcaaaattcattgatgtttcaacaaaataacaatatgaccttaattttgtcaaactcgcaatgatttcaaacattatacttaattttattatttt |
1884356 |
T |
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| Q |
105 |
tgcagatcaagagtggttcatccactcagtttctccataatatgcaaaattgtgcttcttggagcgatagggtaattgaaaaatagcattttgttaatat |
204 |
Q |
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| T |
1884357 |
tgcagatcaagagtggttcatccactcagtttctccataatatgcaaaattgtgcttcttggagcgatagggtaattgaaaaatagcattttgttaatat |
1884456 |
T |
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| Q |
205 |
aaatttattatatttggtcttcaattttatggttctcatggttttgtttatgttaaacagatcttcatgtcaaattatggggtatattgctattaattac |
304 |
Q |
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| T |
1884457 |
aaatttattatatttggtcttcaattttatggttctcatggttttgtttatgttaaacagatcttcatgtcaaattatggggtatattgctattaattac |
1884556 |
T |
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| Q |
305 |
agttctccaacactttctgcagcaattggt |
334 |
Q |
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| T |
1884557 |
agttctccaacactttctgcagcaattggt |
1884586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 210 - 334
Target Start/End: Original strand, 1878511 - 1878636
Alignment:
| Q |
210 |
tattatatttggtcttcaattttatggttctcatggttt-tgttt-atgttaaacagatcttcatgtcaaattatggggtatattgctattaattacagt |
307 |
Q |
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| T |
1878511 |
tattatatttggtcatta-ttttatggttctgatggtttgtgtttcatgttatacagatcttcatgtcaaattatggggtacactgctattagttacagt |
1878609 |
T |
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| Q |
308 |
tctccaacactttctgcagcaattggt |
334 |
Q |
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| T |
1878610 |
tctccaacactttctgcatcaattggt |
1878636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 99 - 180
Target Start/End: Original strand, 1878346 - 1878427
Alignment:
| Q |
99 |
tatttttgcagatcaagagtggttcatccactcagtttctccataatatgcaaaattgtgcttcttggagcgatagggtaat |
180 |
Q |
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| T |
1878346 |
tatttttgcagatcaagagtggttcctccactcagtttttccatattatgcaaaattgtgcttcttggggcgatagggtaat |
1878427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 101 - 180
Target Start/End: Original strand, 1905772 - 1905851
Alignment:
| Q |
101 |
tttttgcagatcaagagtggttcatccactcagtttctccataatatgcaaaattgtgcttcttggagcgatagggtaat |
180 |
Q |
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|||||||||||||||||| |||| ||| ||||||||||| |||||||| |||| |||||||||||| || |||||||||| |
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| T |
1905772 |
tttttgcagatcaagagttgttcctcctctcagtttctctataatatgtaaaagtgtgcttcttggtgcaatagggtaat |
1905851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 103 - 180
Target Start/End: Original strand, 1895919 - 1895996
Alignment:
| Q |
103 |
tttgcagatcaagagtggttcatccactcagtttctccataatatgcaaaattgtgcttcttggagcgatagggtaat |
180 |
Q |
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||||||| |||| ||||||| ||||||||||||||||||| ||||||||||||| |||||||| || |||||||||| |
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| T |
1895919 |
tttgcaggtcaatagtggtttctccactcagtttctccatagtatgcaaaattgtacttcttggtgcaatagggtaat |
1895996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 98 - 194
Target Start/End: Original strand, 1911409 - 1911508
Alignment:
| Q |
98 |
ttatttttgcagatcaagagtggt---tcatccactcagtttctccataatatgcaaaattgtgcttcttggagcgatagggtaattgaaaaatagcatt |
194 |
Q |
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|||||||||||||||||||| || || |||| ||||||||||||| |||||||||| |||||||||||| || ||||||||| || ||||| ||||| |
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| T |
1911409 |
ttatttttgcagatcaagagctgttcctcctccaatcagtttctccattatatgcaaaagtgtgcttcttggggcaatagggtaagtgcaaaattgcatt |
1911508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 282 - 334
Target Start/End: Original strand, 1891600 - 1891652
Alignment:
| Q |
282 |
tggggtatattgctattaattacagttctccaacactttctgcagcaattggt |
334 |
Q |
| |
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|||||||||||| |||||| |||||||||||||||||| || ||||||||||| |
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| T |
1891600 |
tggggtatattggtattaactacagttctccaacacttgcttcagcaattggt |
1891652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 282 - 328
Target Start/End: Original strand, 1896638 - 1896684
Alignment:
| Q |
282 |
tggggtatattgctattaattacagttctccaacactttctgcagca |
328 |
Q |
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| T |
1896638 |
tggggtatattggtattaattacagttctccaacacttgcttcagca |
1896684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 180
Target Start/End: Original strand, 1916672 - 1916751
Alignment:
| Q |
101 |
tttttgcagatcaagagtggttcatccactcagtttctccataatatgcaaaattgtgcttcttggagcgatagggtaat |
180 |
Q |
| |
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||||| ||||||||||||||||| || ||||||||||||||| ||| ||||||| |||||||| | |||||||||| |
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| T |
1916672 |
tttttccagatcaagagtggttcctcaactcagtttctccatcctatttaaaattgctcttcttggggtcatagggtaat |
1916751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 1891163 - 1891217
Alignment:
| Q |
126 |
ccactcagtttctccataatatgcaaaattgtgcttcttggagcgatagggtaat |
180 |
Q |
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| T |
1891163 |
ccactaagtttctccacaatattgaaaagtgtgcttcttggagcaatagggtaat |
1891217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 332
Target Start/End: Original strand, 1912116 - 1912185
Alignment:
| Q |
263 |
agatcttcatgtcaaattatggggtatattgctattaattacagttctccaacactttctgcagcaattg |
332 |
Q |
| |
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|||| ||||| ||| ||| ||||||||||| |||||||| ||||||||||||||| || ||||||||| |
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| T |
1912116 |
agatgttcatctcagattctggggtatattagtattaattcaagttctccaacacttgcttcagcaattg |
1912185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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