View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0156_low_8 (Length: 333)

Name: NF0156_low_8
Description: NF0156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0156_low_8
NF0156_low_8
[»] chr7 (13 HSPs)
chr7 (15-304)||(4643052-4643341)
chr7 (13-304)||(4666281-4666578)
chr7 (13-225)||(4671986-4672198)
chr7 (15-227)||(4661152-4661364)
chr7 (15-304)||(4630257-4630552)
chr7 (15-227)||(4652868-4653080)
chr7 (15-210)||(4636205-4636400)
chr7 (13-216)||(4784402-4784605)
chr7 (13-216)||(4816831-4817034)
chr7 (13-216)||(4697757-4697960)
chr7 (33-216)||(4863255-4863438)
chr7 (13-172)||(4712677-4712836)
chr7 (109-225)||(4846579-4846695)
[»] chr4 (1 HSPs)
chr4 (13-227)||(18926295-18926509)


Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 15 - 304
Target Start/End: Original strand, 4643052 - 4643341
Alignment:
Q  15 gagagcaactcaatttcgttcatgaactcgttggcaccttgttgagagcccgatttgagccgttttatagcaacaagtgtggatccatcaacacaacctt 114  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || || |  |||||||||||||||||||||||||||||||    
T  4643052 gagagcaactcgatttcattcatgaactcgttggcaccttgttgagagcccgatttgaggcgcttaaccgcaacaagtgtggatccatcaacacaacctt 4643151  T
Q  115 tgtacacgttgccaaaccctccaactccgatgataaaagcatcatcgaagttgtttgtggctgctttgatctctgcaattgtaaaggagcggcacagatg 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  4643152 tgtacacgttgccaaaccctccaactccgatgataaaagcatcatcgaagttgtttgtagctgctttgatctctgcgattgtaaaggagcggcacagatg 4643251  T
Q  215 gggcggcaaagatccctcgttctttgtcttcaacaaattatcatccatggcattatgacaccttctcattagccaaaaaacagtgatacc 304  Q
    ||||||||||||  || |||||||||||||||| |||||||| |||||| |||||||||||||||| |||| ||||||||||||||||||    
T  4643252 gggcggcaaagactccccgttctttgtcttcaataaattatcttccatgacattatgacaccttcttattatccaaaaaacagtgatacc 4643341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 13 - 304
Target Start/End: Original strand, 4666281 - 4666578
Alignment:
Q  13 gagagagcaactcaatttcgttcatgaactcgttggcaccttgttgagagcccgatttgagccgttttatagcaacaagtgtggatccatcaacacaacc 112  Q
    |||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||| ||||||||    
T  4666281 gagagagcaattcgatttcgttcatgaactcgttggcaccttgttgagagcctgatttgaggcgttttatggcaacaagtgtggatccatcgacacaacc 4666380  T
Q  113 tttgtacacgttgccaaaccctccaactccgatgataaaagcatcatcgaagttgtttgtggctgctttgatctctgcaattgtaaaggagcggcacaga 212  Q
    |||||||||||||||||||||||||||||||||||| ||| |||| || |||||||||||||||||| |||||||||||||||||||||| ||||||| |    
T  4666381 tttgtacacgttgccaaaccctccaactccgatgatgaaatcatcgtcaaagttgtttgtggctgctctgatctctgcaattgtaaaggaccggcacaaa 4666480  T
Q  213 tggggcggcaaagat-----ccct-cgttctttgtcttcaacaaattatcatccatggcattatgacaccttctcattagccaaaaaacagtgatacc 304  Q
    |||||||||||||||     | ||  ||||||||| ||| |||| |||||  ||||| |||| ||| |||||||| |||||||||||||  |||||||    
T  4666481 tggggcggcaaagatgacaactctgtgttctttgttttcgacaagttatctgccatgacattgtgaaaccttctccttagccaaaaaactatgatacc 4666578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 13 - 225
Target Start/End: Original strand, 4671986 - 4672198
Alignment:
Q  13 gagagagcaactcaatttcgttcatgaactcgttggcaccttgttgagagcccgatttgagccgttttatagcaacaagtgtggatccatcaacacaacc 112  Q
    ||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  4671986 gagagagtaactcgatttcgttcatgaactcgttggcaccttgctgagagcccgatttgagccgttttatggcaacaagtgtggatccatcgacacaacc 4672085  T
Q  113 tttgtacacgttgccaaaccctccaactccgatgataaaagcatcatcgaagttgtttgtggctgctttgatctctgcaattgtaaaggagcggcacaga 212  Q
    |||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||      
T  4672086 tttgtacaggtttccaaaccctccaactccgatgatagaagcatcatcgaagttgtttgtggctgctttgatctctgcgattgtaaaggaacggcacaag 4672185  T
Q  213 tggggcggcaaag 225  Q
    |||||||||||||    
T  4672186 tggggcggcaaag 4672198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 15 - 227
Target Start/End: Original strand, 4661152 - 4661364
Alignment:
Q  15 gagagcaactcaatttcgttcatgaactcgttggcaccttgttgagagcccgatttgagccgttttatagcaacaagtgtggatccatcaacacaacctt 114  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||| || ||||||||||| |||||||||||||||||||    
T  4661152 gagagcaactcgatttcgttcatgaactcgttgacaccttgttgagagcccgatttgaggcgtttaatcgcaacaagtgttgatccatcaacacaacctt 4661251  T
Q  115 tgtacacgttgccaaaccctccaactccgatgataaaagcatcatcgaagttgtttgtggctgctttgatctctgcaattgtaaaggagcggcacagatg 214  Q
    |||||||||||||||||||||||||||| ||||| ||| ||||||| ||||| |||||||||||| |||||||||||||||||||| ||||||||| |||    
T  4661252 tgtacacgttgccaaaccctccaactccaatgatgaaatcatcatcaaagttttttgtggctgctctgatctctgcaattgtaaagtagcggcacaaatg 4661351  T
Q  215 gggcggcaaagat 227  Q
    |||||||||||||    
T  4661352 gggcggcaaagat 4661364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 15 - 304
Target Start/End: Original strand, 4630257 - 4630552
Alignment:
Q  15 gagagcaactcaatttcgttcatgaactcgttggcaccttgttgagagcccgatttgagccgttttatagcaacaagtgtggatccatcaacacaacctt 114  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||| ||||||||||||| ||||||||||    
T  4630257 gagagcaactcgatttcgttcatgaactcgttggcaccttgttgagagcctgatttgaggcgttttatcgcaacaggtgtggatccatcgacacaacctt 4630356  T
Q  115 tgtacacgttgccaaaccctccaactccgatgataaaagcatcatcgaagttgtttgtggctgctttgatctctgcaattgtaaaggagcggcacagatg 214  Q
    |||||||||| ||||||||||||| ||||||||| ||| |||  || |||||||||||||||||||||||||| || ||||||||| |||| |||| |||    
T  4630357 tgtacacgttcccaaaccctccaaatccgatgatgaaatcattgtcaaagttgtttgtggctgctttgatctccgcgattgtaaagtagcgacacaaatg 4630456  T
Q  215 gggcggcaaagat-----ccct-cgttctttgtcttcaacaaattatcatccatggcattatgacaccttctcattagccaaaaaacagtgatacc 304  Q
     ||| ||| ||||     | ||  ||||||||||||  || |||||||  |||||||||| ||  |||||||| |||||||||||| |||||||||    
T  4630457 cggctgcagagataataactctatgttctttgtcttacacgaattatctgccatggcattgtgtaaccttctccttagccaaaaaatagtgatacc 4630552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 15 - 227
Target Start/End: Original strand, 4652868 - 4653080
Alignment:
Q  15 gagagcaactcaatttcgttcatgaactcgttggcaccttgttgagagcccgatttgagccgttttatagcaacaagtgtggatccatcaacacaacctt 114  Q
    ||||| ||||| || || |||||||||||||||||||||||||||||||| |||||||| |||||||| |||||| |  |||||||||| |  |||||||    
T  4652868 gagagtaactcgatctcattcatgaactcgttggcaccttgttgagagccagatttgaggcgttttatcgcaacaggcatggatccatcgatgcaacctt 4652967  T
Q  115 tgtacacgttgccaaaccctccaactccgatgataaaagcatcatcgaagttgtttgtggctgctttgatctctgcaattgtaaaggagcggcacagatg 214  Q
    |||||||||||||||| |||||||| |||||||| ||| ||||||||||||| ||||||||||||||||||||||| ||||| |||||||| |||| |||    
T  4652968 tgtacacgttgccaaatcctccaacaccgatgatgaaaacatcatcgaagttatttgtggctgctttgatctctgcgattgtgaaggagcgacacaaatg 4653067  T
Q  215 gggcggcaaagat 227  Q
     || |||||||||    
T  4653068 tggtggcaaagat 4653080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 15 - 210
Target Start/End: Original strand, 4636205 - 4636400
Alignment:
Q  15 gagagcaactcaatttcgttcatgaactcgttggcaccttgttgagagcccgatttgagccgttttatagcaacaagtgtggatccatcaacacaacctt 114  Q
    ||||||||||| || |||||||||||||| || ||||||||||||||||||||  |||| |||||||| |||||  |||||||||||||||   ||||||    
T  4636205 gagagcaactcgatctcgttcatgaactcatttgcaccttgttgagagcccgacctgaggcgttttatcgcaacgggtgtggatccatcaatgaaacctt 4636304  T
Q  115 tgtacacgttgccaaaccctccaactccgatgataaaagcatcatcgaagttgtttgtggctgctttgatctctgcaattgtaaaggagcggcaca 210  Q
    ||||||| || |||||||| ||||| ||||| ||     ||||||||||||| |||||||||||| |||||||||| ||||||||| |||||||||    
T  4636305 tgtacacattcccaaaccccccaacaccgataatgttttcatcatcgaagttttttgtggctgctctgatctctgcgattgtaaagtagcggcaca 4636400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 13 - 216
Target Start/End: Complemental strand, 4784605 - 4784402
Alignment:
Q  13 gagagagcaactcaatttcgttcatgaactcgttggcaccttgttgagagcccgatttgagccgttttatagcaacaagtgtggatccatcaacacaacc 112  Q
    |||||||||||||||| || |||| |||||||||  ||||||||||||| || | ||| || |||||||| |||||  ||||   |||||||| | ||||    
T  4784605 gagagagcaactcaatctcattcaagaactcgttcacaccttgttgagaacctggtttaagacgttttatcgcaactggtgtaactccatcaatataacc 4784506  T
Q  113 tttgtacacgttgccaaaccctccaactccgatgataaaagcatcatcgaagttgtttgtggctgctttgatctctgcaattgtaaaggagcggcacaga 212  Q
    ||||||||| ||||| ||||||||||| ||||||||||||  ||| |||||||||||||| |||||||| || || || ||||||||  ||||||||| |    
T  4784505 tttgtacacattgccgaaccctccaaccccgatgataaaaatatcttcgaagttgtttgtagctgcttttatttccgctattgtaaaatagcggcacaaa 4784406  T
Q  213 tggg 216  Q
    ||||    
T  4784405 tggg 4784402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 13 - 216
Target Start/End: Complemental strand, 4817034 - 4816831
Alignment:
Q  13 gagagagcaactcaatttcgttcatgaactcgttggcaccttgttgagagcccgatttgagccgttttatagcaacaagtgtggatccatcaacacaacc 112  Q
    |||||||||||||||| || |||| |||||||||  ||||||||||||| || | ||| || |||||||| |||||  ||||   |||||||| | ||||    
T  4817034 gagagagcaactcaatctcattcaagaactcgttaacaccttgttgagaaccaggtttaagacgttttatcgcaactggtgtaactccatcaatataacc 4816935  T
Q  113 tttgtacacgttgccaaaccctccaactccgatgataaaagcatcatcgaagttgtttgtggctgctttgatctctgcaattgtaaaggagcggcacaga 212  Q
    ||||||||| ||||| ||||||||||| ||||||||||||  ||| |||||||||||||| |||||||| || || || ||||||||  ||||||||| |    
T  4816934 tttgtacacattgccgaaccctccaaccccgatgataaaaatatcttcgaagttgtttgtagctgcttttatttccgctattgtaaaatagcggcacaaa 4816835  T
Q  213 tggg 216  Q
    ||||    
T  4816834 tggg 4816831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 13 - 216
Target Start/End: Complemental strand, 4697960 - 4697757
Alignment:
Q  13 gagagagcaactcaatttcgttcatgaactcgttggcaccttgttgagagcccgatttgagccgttttatagcaacaagtgtggatccatcaacacaacc 112  Q
    ||||||||||||| ||||| ||||||||||||||  ||||||||||||| |||| ||| |  |||||||| || ||| ||||   | |||| |   ||||    
T  4697960 gagagagcaactcgatttcattcatgaactcgtttacaccttgttgagaacccggtttcaaacgttttattgctacaggtgtaccttcatcgatgtaacc 4697861  T
Q  113 tttgtacacgttgccaaaccctccaactccgatgataaaagcatcatcgaagttgtttgtggctgctttgatctctgcaattgtaaaggagcggcacaga 212  Q
    |||| ||||||| ||||||||||||||||| |||||||||  ||| |||||||||||||| || ||| | ||||| || ||||||||  ||||||||| |    
T  4697860 tttgaacacgttaccaaaccctccaactccaatgataaaaatatcttcgaagttgtttgtagcggctcttatctccgctattgtaaaatagcggcacaaa 4697761  T
Q  213 tggg 216  Q
    ||||    
T  4697760 tggg 4697757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 33 - 216
Target Start/End: Original strand, 4863255 - 4863438
Alignment:
Q  33 ttcatgaactcgttggcaccttgttgagagcccgatttgagccgttttatagcaacaagtgtggatccatcaacacaacctttgtacacgttgccaaacc 132  Q
    ||||||||||| ||   |||||||||||| || | ||| || |||||||| |||||| || ||  |||||||| | ||||||||||||||||||| ||||    
T  4863255 ttcatgaactcatttataccttgttgagaacctggtttaagacgttttatcgcaacaggtatgtctccatcaatataacctttgtacacgttgccgaacc 4863354  T
Q  133 ctccaactccgatgataaaagcatcatcgaagttgtttgtggctgctttgatctctgcaattgtaaaggagcggcacagatggg 216  Q
    |||||||||| ||||| |||  ||| || ||||||||||| || ||| | |||||||  ||||||||  ||||||||| |||||    
T  4863355 ctccaactccaatgatgaaaatatcgtcaaagttgtttgtagcagctcttatctctgttattgtaaaatagcggcacaaatggg 4863438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 13 - 172
Target Start/End: Complemental strand, 4712836 - 4712677
Alignment:
Q  13 gagagagcaactcaatttcgttcatgaactcgttggcaccttgttgagagcccgatttgagccgttttatagcaacaagtgtggatccatcaacacaacc 112  Q
    ||||||||||||| ||||| |||||||| || ||   ||||||| |||| ||| ||||  | |||||||| |||||| || ||  ||||||||   ||||    
T  4712836 gagagagcaactcgatttcattcatgaattcatttagaccttgtcgagaacccaatttacgacgttttatcgcaacaggtatgagtccatcaatgtaacc 4712737  T
Q  113 tttgtacacgttgccaaaccctccaactccgatgataaaagcatcatcgaagttgtttgt 172  Q
    ||||||||||||||| || |||||||| ||||||||||||  ||| ||||||||||||||    
T  4712736 tttgtacacgttgccgaatcctccaaccccgatgataaaaatatcttcgaagttgtttgt 4712677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 109 - 225
Target Start/End: Complemental strand, 4846695 - 4846579
Alignment:
Q  109 aacctttgtacacgttgccaaaccctccaactccgatgataaaagcatcatcgaagttgtttgtggctgctttgatctctgcaattgtaaaggagcggca 208  Q
    ||||||||||||||||||| ||||||||| |||| |||||||||  ||| |||||||||||||| ||| || | ||||| || ||||||||  |||||||    
T  4846695 aacctttgtacacgttgccgaaccctccagctccaatgataaaaatatcttcgaagttgtttgtagcttctcttatctccgctattgtaaaatagcggca 4846596  T
Q  209 cagatggggcggcaaag 225  Q
    || ||||| ||| ||||    
T  4846595 caaatgggacggtaaag 4846579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 13 - 227
Target Start/End: Complemental strand, 18926509 - 18926295
Alignment:
Q  13 gagagagcaactcaatttcgttcatgaactcgttggcaccttgttgagagcccgatttgagccgttttatagcaacaagtgtggatccatcaacacaacc 112  Q
    ||||||||||||| || || ||||||||||||||||| |||||||||||||| | |||||| |||||||| |||||  ||||||||  ||| |   ||||    
T  18926509 gagagagcaactcgatctcattcatgaactcgttggccccttgttgagagcctggtttgagacgttttattgcaacgggtgtggatttatcgatgaaacc 18926410  T
Q  113 tttgtacacgttgccaaaccctccaactccgatgataaaagcatcatcgaagttgtttgtggctgctttgatctctgcaattgtaaaggagcggcacaga 212  Q
    ||| |||||||||||||||||||||||||||||||| ||| ||||||| ||||| |||||||||||||| |||||||||||||||||| ||||||||| |    
T  18926409 tttatacacgttgccaaaccctccaactccgatgattaaatcatcatcaaagttatttgtggctgcttttatctctgcaattgtaaagtagcggcacaaa 18926310  T
Q  213 tggggcggcaaagat 227  Q
    |||||||| ||||||    
T  18926309 tggggcggtaaagat 18926295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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