View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0157-INSERTION-6 (Length: 238)

Name: NF0157-INSERTION-6
Description: NF0157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0157-INSERTION-6
NF0157-INSERTION-6
[»] chr6 (2 HSPs)
chr6 (29-238)||(8395536-8395748)
chr6 (61-215)||(8406130-8406294)
[»] chr3 (1 HSPs)
chr3 (175-212)||(30292864-30292901)
[»] chr8 (1 HSPs)
chr8 (175-215)||(18079758-18079798)
[»] scaffold1213 (1 HSPs)
scaffold1213 (175-212)||(804-841)
[»] chr5 (2 HSPs)
chr5 (175-212)||(1409413-1409450)
chr5 (176-208)||(2415461-2415493)
[»] chr4 (3 HSPs)
chr4 (176-213)||(3812311-3812348)
chr4 (175-212)||(4937764-4937801)
chr4 (175-212)||(36804574-36804611)
[»] chr2 (2 HSPs)
chr2 (180-212)||(14825629-14825661)
chr2 (176-212)||(19581019-19581055)


Alignment Details
Target: chr6 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 29 - 238
Target Start/End: Original strand, 8395536 - 8395748
Alignment:
Q  29 ctatgttcagaaacaagaaagaaatctactactaatttatctacttctaatttaagaatgttaactctctctcagtctccacttacgaccctc--gggtg 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  8395536 ctatgttcagaaacaagaaagaaatctactactaatttatctacttctaatttaagaatgttaactctctctcagtctccacttacgaccctcaagggtg 8395635  T
Q  127 atttagtatcaattatatttatccaaaatcacgttttatcttcttttgtaaataagtgattttcatatatatttaa-ttttttctttggtaactttgttg 225  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||  |||| ||||    
T  8395636 atttagtatcaattatatttatccaaaatcacgttttattttcttttgtaaataagtgattttcaaatatatttaatttttttctttggcgacttcgttg 8395735  T
Q  226 tatgtggcgttat 238  Q
    |||||| ||||||    
T  8395736 tatgtgacgttat 8395748  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 215
Target Start/End: Complemental strand, 8406294 - 8406130
Alignment:
Q  61 taatttatctacttctaatttaagaatgttaa-ctctctctcagtctccactta-------cgaccctc--gggtgatttagtatcaattatatttatcc 150  Q
    |||||||||||||||||||||||||||||||  |||||||||   |||||||||       ||||| ||  || ||| |||| ||||||||| ||||  |    
T  8406294 taatttatctacttctaatttaagaatgttattctctctctcgacctccacttaagagttacgaccatcaaggttgacttagaatcaattatttttacac 8406195  T
Q  151 aaaatcacgttttatcttcttttgtaaataagtgattttcatatatatttaattttttctttggt 215  Q
    ||||||| ||||| ||||||||| |  | |||||||||| |  |||||||| |||||||||||||    
T  8406194 aaaatcaagttttttcttctttttttcaaaagtgatttttacttatatttagttttttctttggt 8406130  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 30292864 - 30292901
Alignment:
Q  175 taaataagtgattttcatatatatttaattttttcttt 212  Q
    |||||||||||||||||||| |||||||||||||||||    
T  30292864 taaataagtgattttcatatttatttaattttttcttt 30292901  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 18079758 - 18079798
Alignment:
Q  175 taaataagtgattttcatatatatttaattttttctttggt 215  Q
    |||||||||||||||||| ||||||||||||||||| ||||    
T  18079758 taaataagtgattttcatgtatatttaattttttctgtggt 18079798  T

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Target: scaffold1213 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1213
Description:

Target: scaffold1213; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 804 - 841
Alignment:
Q  175 taaataagtgattttcatatatatttaattttttcttt 212  Q
    ||||||||||||||||| || |||||||||||||||||    
T  804 taaataagtgattttcacatttatttaattttttcttt 841  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 1409413 - 1409450
Alignment:
Q  175 taaataagtgattttcatatatatttaattttttcttt 212  Q
    ||||||||||||||||| ||||||| ||||||||||||    
T  1409413 taaataagtgattttcacatatattaaattttttcttt 1409450  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 2415461 - 2415493
Alignment:
Q  176 aaataagtgattttcatatatatttaatttttt 208  Q
    ||||||||||||||||||||||||| |||||||    
T  2415461 aaataagtgattttcatatatatttcatttttt 2415493  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 3812348 - 3812311
Alignment:
Q  176 aaataagtgattttcatatatatttaattttttctttg 213  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  3812348 aaataaatgattttcacatatatttaattttttctttg 3812311  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 4937764 - 4937801
Alignment:
Q  175 taaataagtgattttcatatatatttaattttttcttt 212  Q
    ||||||||||||||||||||||||| | ||||||||||    
T  4937764 taaataagtgattttcatatatattaagttttttcttt 4937801  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 36804611 - 36804574
Alignment:
Q  175 taaataagtgattttcatatatatttaattttttcttt 212  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  36804611 taaataagtgattttcatatatatttggttttttcttt 36804574  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 14825629 - 14825661
Alignment:
Q  180 aagtgattttcatatatatttaattttttcttt 212  Q
    ||||||||||||||| |||||||||||||||||    
T  14825629 aagtgattttcatatctatttaattttttcttt 14825661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 19581055 - 19581019
Alignment:
Q  176 aaataagtgattttcatatatatttaattttttcttt 212  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  19581055 aaataagtgattttcatatctatttcattttttcttt 19581019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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