View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0157_low_11 (Length: 407)
Name: NF0157_low_11
Description: NF0157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0157_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 29 - 396
Target Start/End: Complemental strand, 39982685 - 39982318
Alignment:
| Q |
29 |
catcatcaaaaggaacaaaagcgcctagcttggtcttattcctgagccaagtgatggtgtttcggcaaacaggcaataagataatggccatgttcaattt |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39982685 |
catcatcaaaaggaacaaaagcgcctagcttggtcttattcctgagccaagtgatggtgtttcggcaaacaggcaataagataatggccatgttcaattt |
39982586 |
T |
|
| Q |
129 |
aagtgtttcagcagccccttttgccatgcacacacagtgccccatcactttatatgcagatcttctcctatattgcacaaatttaaaggcaaataggcct |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39982585 |
aagtgtttcagcagccccttttgccatgcacacacagtgccccatcactttatatgcagatcttctcctatattgcacaaatttaaaggcaaataggcct |
39982486 |
T |
|
| Q |
229 |
aacatgacacaaatccacagagcaaatacccaggatcttcgccagttatcctggaagaagtacttggtatctctataccacctcttaataggatttccct |
328 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39982485 |
aacatgacaccaatccacagagcaaatacccaggatcttcgccagttatcctggaagaagtacttggtatctctataccacctcttaataggatttccct |
39982386 |
T |
|
| Q |
329 |
caaatgtaggcctaagcttttggcttagcatttggctcaggtacttactttctccccttgtagtctct |
396 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39982385 |
caaatgtaggcctaagcttttggcttagcatttggctcaggtacttactttctccccttgtagtctct |
39982318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 30 - 383
Target Start/End: Complemental strand, 44914682 - 44914329
Alignment:
| Q |
30 |
atcatcaaaaggaacaaaagcgcctagcttggtcttattcctgagccaagtgatggtgtttcggcaaacaggcaataagataatggccatgttcaattta |
129 |
Q |
| |
|
|||||||||||||||| | |||||| |||||||| ||||| ||||| |||||||||||||| |||||||| || |||||||| |||||||||||||| |
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| T |
44914682 |
atcatcaaaaggaacagcaatgcctagtttggtcttgttcctaagccatgtgatggtgtttcgacaaacaggtaacaagataatagccatgttcaatttg |
44914583 |
T |
|
| Q |
130 |
agtgtttcagcagccccttttgccatgcacacacagtgccccatcactttatatgcagatcttctcctatattgcacaaatttaaaggcaaataggccta |
229 |
Q |
| |
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||||| ||||| || ||||| |||||||||||||| || ||||| |||| ||| ||| | |||| || || |||| ||||| |||||||||| || |
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| T |
44914582 |
agtgtctcagctgcacctttagccatgcacacacaatgacccattacttcataagcatcttttcttctgtactgcatgaatttgtaggcaaatagaccac |
44914483 |
T |
|
| Q |
230 |
acatgacacaaatccacagagcaaatacccaggatcttcgccagttatcctggaagaagtacttggtatctctataccacctcttaataggatttccctc |
329 |
Q |
| |
|
|||| |||| |||||| || | |||| ||| | |||| |||| || ||||| | ||||| ||| ||||||||||| | || || |||||| || |
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| T |
44914482 |
acataacaccaatccatagtaccaatatccaagttctttgccaattgtcctgcagaaagtaaatggcatctctatacctcttccgaacaggattgtattc |
44914383 |
T |
|
| Q |
330 |
aaatgtaggcctaagcttttggcttagcatttggctcaggtacttactttctcc |
383 |
Q |
| |
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| ||||| | |||||||| ||||||||||||||||||||||||||| ||||| |
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|
| T |
44914382 |
atatgtacccttaagctttatgcttagcatttggctcaggtacttactatctcc |
44914329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 31 - 247
Target Start/End: Complemental strand, 44898767 - 44898551
Alignment:
| Q |
31 |
tcatcaaaaggaacaaaagcgcctagcttggtcttattcctgagccaagtgatggtgtttcggcaaacaggcaataagataatggccatgttcaatttaa |
130 |
Q |
| |
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||||||||||||||| | ||||||||||||||| | ||| ||||| || | |||||||||||||||||| ||||||||||||||||| |||||||| | |
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| T |
44898767 |
tcatcaaaaggaacagcaatgcctagcttggtcttgtccctaagccaggttacggtgtttcggcaaacaggtaataagataatggccatattcaatttga |
44898668 |
T |
|
| Q |
131 |
gtgtttcagcagccccttttgccatgcacacacagtgccccatcactttatatgcagatcttctcctatattgcacaaatttaaaggcaaataggcctaa |
230 |
Q |
| |
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|||| ||||| || ||||| ||||| || ||||| || |||||||||| |||||||| | |||| ||||| |||| ||||| |||||||||| || | |
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| T |
44898667 |
gtgtctcagctgcacctttagccatacagacacaatggcccatcacttcatatgcagcttttcttctatactgcatgaatttgtaggcaaatagaccaca |
44898568 |
T |
|
| Q |
231 |
catgacacaaatccaca |
247 |
Q |
| |
|
||| |||| |||||||| |
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| T |
44898567 |
cataacaccaatccaca |
44898551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 31 - 247
Target Start/End: Complemental strand, 44885439 - 44885223
Alignment:
| Q |
31 |
tcatcaaaaggaacaaaagcgcctagcttggtcttattcctgagccaagtgatggtgtttcggcaaacaggcaataagataatggccatgttcaatttaa |
130 |
Q |
| |
|
|||| ||||||||||| | ||||||||||||||| |||||||||| || | ||||||||||||||||| || ||||||| |||||||||||||| | |
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| T |
44885439 |
tcattaaaaggaacaacaatgcctagcttggtcttgctcctgagccatgtaacagtgtttcggcaaacaggtaacaagataagagccatgttcaatttga |
44885340 |
T |
|
| Q |
131 |
gtgtttcagcagccccttttgccatgcacacacagtgccccatcactttatatgcagatcttctcctatattgcacaaatttaaaggcaaataggcctaa |
230 |
Q |
| |
|
|||| ||||| || ||||| |||||||| ||||| || |||||||| | ||| |||| | |||| | ||| ||||||||||| |||||||||| ||||| |
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| T |
44885339 |
gtgtctcagctgcacctttagccatgcaaacacaatggcccatcacctcataagcagcttttcttcgatactgcacaaatttgtaggcaaatagacctaa |
44885240 |
T |
|
| Q |
231 |
catgacacaaatccaca |
247 |
Q |
| |
|
||| || | |||||||| |
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| T |
44885239 |
cataactccaatccaca |
44885223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 152
Target Start/End: Original strand, 46562141 - 46562263
Alignment:
| Q |
30 |
atcatcaaaaggaacaaaagcgcctagcttggtcttattcctgagccaagtgatggtgtttcggcaaacaggcaataagataatggccatgttcaattta |
129 |
Q |
| |
|
||||||||| ||||||| | | |||| |||||||| | |||||||||||||||||||||| |||||||||| ||| || | |||||||| || || |
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|
| T |
46562141 |
atcatcaaagggaacaacaactcctaatttggtcttgcttctgagccaagtgatggtgtttctacaaacaggcattaaaattaatgccatgttgaacttg |
46562240 |
T |
|
| Q |
130 |
agtgtttcagcagccccttttgc |
152 |
Q |
| |
|
|| || |||||||| || ||||| |
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|
| T |
46562241 |
agagtctcagcagcaccctttgc |
46562263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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