View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0157_low_12 (Length: 394)
Name: NF0157_low_12
Description: NF0157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0157_low_12 |
 | |
|
| [»] scaffold0508 (1 HSPs) |
| | |
|
| [»] scaffold0281 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 17463339 - 17463722
Alignment:
| Q |
1 |
tcatcatgttccctcatgttgccaccagattacaactgnnnnnnnatcacgtgtgtttgtctcaaaaaggaaaggaacaacaagaatgttcttaagaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17463339 |
tcatcatgttccctcatgttgccaccagatcacaactgttttttcatcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaagaaca |
17463438 |
T |
|
| Q |
101 |
ttctccatgtggcaaattttacaacttggacattcttgctctcaaagcaacaaagtacaacacttgtagcttccaaagaagtgccaaacagctgtaaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
17463439 |
ttctccatgtggcaaattttacaacttggacactcttgctctcaaagcaacaaaggacagcacttgtagctttcaaagaagtgccaaacagctgtaaaaa |
17463538 |
T |
|
| Q |
201 |
caagtggcccccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaagttggaaattccagaacgttctgcatgaacaaaattcacttt |
300 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
17463539 |
caagtggcctccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaaattggaagttccagaacgttctgcatgaacaaaattcacttt |
17463638 |
T |
|
| Q |
301 |
tttctcatccttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgtg |
384 |
Q |
| |
|
|||||||| ||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
17463639 |
tttctcattcttgcgctccaagcaacaaaaacataagcacatgggctgtttttaacaaggaaaacacagctgtttttgtctgtg |
17463722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 17589875 - 17589492
Alignment:
| Q |
1 |
tcatcatgttccctcatgttgccaccagattacaactgnnnnnnnatcacgtgtgtttgtctcaaaaaggaaaggaacaacaagaatgttcttaagaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17589875 |
tcatcatgttccctcatgttgccaccagatcacaactgttttttcatcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaagaaca |
17589776 |
T |
|
| Q |
101 |
ttctccatgtggcaaattttacaacttggacattcttgctctcaaagcaacaaagtacaacacttgtagcttccaaagaagtgccaaacagctgtaaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
17589775 |
ttctccatgtggcaaattttacaacttggacactcttgctctcaaagcaacaaaggacagcacttgtagctttcaaagaagtgccaaacagctgtaaaaa |
17589676 |
T |
|
| Q |
201 |
caagtggcccccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaagttggaaattccagaacgttctgcatgaacaaaattcacttt |
300 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
17589675 |
caagtggcctccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaaattggaagttccagaacgttctgcatgaacaaaattcacttt |
17589576 |
T |
|
| Q |
301 |
tttctcatccttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgtg |
384 |
Q |
| |
|
|||||||| ||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
17589575 |
tttctcattcttgcgctccaagcaacaaaaacataagcacatgggctgtttttaacaaggaaaacacagctgtttttgtctgtg |
17589492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 7343579 - 7343196
Alignment:
| Q |
1 |
tcatcatgttccctcatgttgccaccagattacaactgnnnnnnnatcacgtgtgtttgtctcaaaaaggaaaggaacaacaagaatgttcttaagaaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7343579 |
tcatcatgttccctcatgttgccaccaaatcacaactgttttttcatcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaagaaca |
7343480 |
T |
|
| Q |
101 |
ttctccatgtggcaaattttacaacttggacattcttgctctcaaagcaacaaagtacaacacttgtagcttccaaagaagtgccaaacagctgtaaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| | | |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
7343479 |
ttctccatgtggcaaattttacaacttggatacttttgctctcaaagcaacaaaggacaacacttgtagctttcaaagaagtgccaaacagctgtaaaaa |
7343380 |
T |
|
| Q |
201 |
caagtggcccccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaagttggaaattccagaacgttctgcatgaacaaaattcacttt |
300 |
Q |
| |
|
||||||||| |||||||||||| ||||||||| ||| |||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
7343379 |
caagtggcctccaaacttctacggcttgcatttacgcgtccacattttctctttgcaaattggaagttccagaacgttctgcatgaacaaaattcacttt |
7343280 |
T |
|
| Q |
301 |
tttctcatccttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgtg |
384 |
Q |
| |
|
|||||||| ||||| | |||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
7343279 |
tttctcattcttgcactccaagcaacaaaaacataagcacataggctgtttttagcaaggaaaacacagttgtttttgtctgtg |
7343196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 16282221 - 16281826
Alignment:
| Q |
1 |
tcatcatgttccctcatgttgccaccagattacaactgnnnnnnnatcacgtgtgtttgtctcaaaaaggaaaggaacaacaagaatgttcttaagaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16282221 |
tcatcatgttccctcatgttgccaccagatcacaactgttttttcatcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaagaaca |
16282122 |
T |
|
| Q |
101 |
ttctccatgtggcaaattttacaacttggacattcttgctctcaaagcaacaaagtacaacacttgtagcttccaaagaagtgccaaacagctgtaaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
16282121 |
ttctccatgtggcaaattttacaacttggacactcttgctctcaaagcaacaaaggacagcacttgtagctttcaaagaagtgccaaacagctgtaaaaa |
16282022 |
T |
|
| Q |
201 |
caagtggcccccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaagttggaaattccagaacgt------------tctgcatgaac |
288 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||| |
|
|
| T |
16282021 |
caagtggcctccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaaattggaagttccagaacgttctggagaacgttctgcatgaac |
16281922 |
T |
|
| Q |
289 |
aaaattcacttttttctcatccttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgtg |
384 |
Q |
| |
|
|||||||||||||||||||| |||| || |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
16281921 |
aaaattcacttttttctcattcttgtgctccaagcaacaaaaacataagcacatgggctgtttttaacaaggaaaacacagctgtttttgtctgtg |
16281826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 16296425 - 16296030
Alignment:
| Q |
1 |
tcatcatgttccctcatgttgccaccagattacaactgnnnnnnnatcacgtgtgtttgtctcaaaaaggaaaggaacaacaagaatgttcttaagaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16296425 |
tcatcatgttccctcatgttgccaccagatcacaactgttttttcatcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaagaaca |
16296326 |
T |
|
| Q |
101 |
ttctccatgtggcaaattttacaacttggacattcttgctctcaaagcaacaaagtacaacacttgtagcttccaaagaagtgccaaacagctgtaaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
16296325 |
ttctccatgtggcaaattttacaacttggacactcttgctctcaaagcaacaaaggacagcacttgtagctttcaaagaagtgccaaacagctgtaaaaa |
16296226 |
T |
|
| Q |
201 |
caagtggcccccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaagttggaaattccagaacgt------------tctgcatgaac |
288 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||| |
|
|
| T |
16296225 |
caagtggcctccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaaattggaagttccagaacgttctggagaacgttctgcatgaac |
16296126 |
T |
|
| Q |
289 |
aaaattcacttttttctcatccttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgtg |
384 |
Q |
| |
|
|||||||||||||||||||| |||| || |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
16296125 |
aaaattcacttttttctcattcttgtgctccaagcaacaaaaacataagcacatgggctgtttttaacaaggaaaacacagctgtttttgtctgtg |
16296030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 64 - 384
Target Start/End: Complemental strand, 17453869 - 17453549
Alignment:
| Q |
64 |
aaaaaggaaaggaacaacaagaatgttcttaagaacattctccatgtggcaaattttacaacttggacattcttgctctcaaagcaacaaagtacaacac |
163 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||| |
|
|
| T |
17453869 |
aaaaaggaaaggaacaacaagaatgttcttaagaacattctccatgtggcaaattttacaacttggacactcttgctctcaaagcaacaaaggacagcac |
17453770 |
T |
|
| Q |
164 |
ttgtagcttccaaagaagtgccaaacagctgtaaaaacaagtggcccccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaagttgg |
263 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
17453769 |
ttgtagctttcaaagaagtgccaaacagctgtaaaaacaagtggcctccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaaattgg |
17453670 |
T |
|
| Q |
264 |
aaattccagaacgttctgcatgaacaaaattcacttttttctcatccttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaa |
363 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
17453669 |
aagttccagaacgttctgcatgaacaaaattcacttttttctcattcttgcgctccaagcaacaaaaacataagcacatgggctgtttttaacaaggaaa |
17453570 |
T |
|
| Q |
364 |
acacagctgtttttgtctgtg |
384 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
17453569 |
acacagctgtttttgtctgtg |
17453549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 12593875 - 12594271
Alignment:
| Q |
1 |
tcatcatgttccctcatgttgccaccagattacaactgnnnnnnnatcacgtgtgtttgtctcaaaa-aggaaaggaacaacaagaatgttcttaagaac |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||||||||| ||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
12593875 |
tcatcatgttccctcatgttgccaccagatcacaactgttttttcatcacgtgtggttgcctcaaaaaaggaaaggaacaacaagaatgttcttaagaac |
12593974 |
T |
|
| Q |
100 |
attctccatgtggcaaattttacaacttggacattcttgctctcaaagcaacaaagtacaacacttgtagcttccaaagaagtgccaaacagctgtaaaa |
199 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||| ||| |||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
12593975 |
attctccatttggcaaattttacaacttggacactcttgctctcaaagcaaaaaaggacagcacttgtagcttttaaagaagcgccaaacagctgtaaaa |
12594074 |
T |
|
| Q |
200 |
acaagtggcccccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaagttggaaattcc------------agaacgttctgcatgaa |
287 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||| |
|
|
| T |
12594075 |
acaagtggcctccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaaattggaagttccagaacgttctggagaacgttctgcatgaa |
12594174 |
T |
|
| Q |
288 |
caaaattcacttttttctcatccttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgtg |
384 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
12594175 |
caaaattcacttttttctcattcttgcgctccaagcaacaaaaacataaccacatgggctgtttttaacaaggaaaacacagctgtttttgtctgtg |
12594271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 12584069 - 12584348
Alignment:
| Q |
1 |
tcatcatgttccctcatgttgccaccagattacaactgnnnnnnnatcacgtgtgtttgtctcaaaaaggaaaggaacaacaagaatgttcttaagaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12584069 |
tcatcatgttccctcatgttgccaccagatcacaactgttttttcatcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaagaaca |
12584168 |
T |
|
| Q |
101 |
ttctccatgtggcaaattttacaacttggacattcttgctctcaaagcaacaaagtacaacacttgtagcttccaaagaagtgccaaacagctgtaaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
12584169 |
ttctccatgtggcaaattttacaacttggacactcttgctctcaaagcaacaaaggacagcacttgtagctttcaaagaagtgccaaacagctgtaaaaa |
12584268 |
T |
|
| Q |
201 |
caagtggcccccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaagttggaaattccagaacgttct |
280 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
12584269 |
caagtggcctccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaaattggaagttccagaacgttct |
12584348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 3 - 381
Target Start/End: Complemental strand, 48297093 - 48296709
Alignment:
| Q |
3 |
atcatgttccctcatgttgccaccagattacaactgnnnnnnn--atcacgtgtgtttgtctcaaaaaggaaaggaacaacaagaatgttcttaagaaca |
100 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48297093 |
atcatgtcccctcatgttgccaccagatcacaactattttttttcatcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaagaaca |
48296994 |
T |
|
| Q |
101 |
ttctccatgtggcaaattttacaacttggacattcttgctctcaaagcaacaaagtacaacacttgtagcttccaaagaagtgccaaacagctgtaaaaa |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||| ||||||| |||||||| |
|
|
| T |
48296993 |
ttctccatgtggcaaactttacaacttggacattcttgctttcaaagcaacaaaggacaacacttgtagctgtcaaagaagtgtcaaacagttgtaaaaa |
48296894 |
T |
|
| Q |
201 |
caagtggcccccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaagtt---ggaaattc--cagaacgttctgcatgaacaaaattc |
295 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| | | ||| ||||| || |||||| ||||||| | |
|
|
| T |
48296893 |
caagtggcctccaaacttctacagcttgcattcacgtgtcaaccttttctctttgcaagttccagaacgttctggagaacattttgcatggacaaaatgc |
48296794 |
T |
|
| Q |
296 |
acttttttctcatccttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtct |
381 |
Q |
| |
|
|| |||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
48296793 |
acatttttctcattcttgcgcaccaagcaacaaaaacataagcaca-gggctgtttttagcaaggaaaacacaactgtttttgtct |
48296709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 14337643 - 14337260
Alignment:
| Q |
1 |
tcatcatgttccctcatgttgccaccagattacaactgnnnnnnnatcacgtgtgtttgtctcaaaaaggaaaggaacaacaagaatgttcttaagaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| ||||| |||| |||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14337643 |
tcatcatgttccctcatgttgccaccagatcacaactgttttttcatcacatgtggttgtctaaaaaaggaaaggaacaacaagaatgttcttaagaaca |
14337544 |
T |
|
| Q |
101 |
ttctccatgtggcaaattttacaacttggacattcttgctctcaaagcaacaaagtacaacacttgtagcttccaaagaagtgccaaacagctgtaaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
14337543 |
ttctccatgtggcaaattttacaacttggacactcttgctctcaaagcaacaaaggacagcacttgtagctttcaaagaagtgccaaacagctgtaaaaa |
14337444 |
T |
|
| Q |
201 |
caagtggcccccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaagttggaaattccagaacgttctgcatgaacaaaattcacttt |
300 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
14337443 |
caagtggcctccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaaattggaagttccagaacgttctgcatgaacaaaattcacttt |
14337344 |
T |
|
| Q |
301 |
tttctcatccttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgtg |
384 |
Q |
| |
|
|||||||| |||| || |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
14337343 |
tttctcattcttgtgctccaagcaacaaaaacataagcacatgggctgtttttaacaaggaaaacacagctgtttttgtctgtg |
14337260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 23602830 - 23602435
Alignment:
| Q |
1 |
tcatcatgttccctcatgttgccaccagattacaactgnnnnnnnatcacgtgtgtttgtctcaaaaaggaaaggaacaacaagaatgttcttaagaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23602830 |
tcatcatgttccctcatgttgccaccagatcacaactgttttttcatcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaagaaca |
23602731 |
T |
|
| Q |
101 |
ttctccatgtggcaaattttacaacttggacattcttgctctcaaagcaacaaagtacaacacttgtagcttccaaagaagtgccaaacagctgtaaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
23602730 |
ttctccatgtggcaaattttacaacttggacactcttgctctcaaagcaacaaaggacagcacttgtagctttcaaagaagtgccaaacagctgtaaaaa |
23602631 |
T |
|
| Q |
201 |
caagtggcccccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaagttggaaattccagaacgt------------tctgcatgaac |
288 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||| |
|
|
| T |
23602630 |
caagtggcctccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaaattggaagttccagaacgttctggagaacgttctgcatgaac |
23602531 |
T |
|
| Q |
289 |
aaaattcacttttttctcatccttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgtg |
384 |
Q |
| |
|
|||||||||||||||||||| |||| || |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
23602530 |
aaaattcacttttttctcattcttgtgctccaagcaacaaaaacataagcacatgggctgtttttaacaaggaaaacacagctgtttttgtctgtg |
23602435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 23593909 - 23593514
Alignment:
| Q |
1 |
tcatcatgttccctcatgttgccaccagattacaactgnnnnnnnatcacgtgtgtttgtctcaaaaaggaaaggaacaacaagaatgttcttaagaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23593909 |
tcatcatgttccctcatgttgccaccagatcacaactgttttttcatcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaagaaca |
23593810 |
T |
|
| Q |
101 |
ttctccatgtggcaaattttacaacttggacattcttgctctcaaagcaacaaagtacaacacttgtagcttccaaagaagtgccaaacagctgtaaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
23593809 |
ttctccatgtggcaaattttacaacttggacactcttgctctcaaagcaacaaaggacagcacttgtagctttcaaaaaagtgccaaacagctgtaaaaa |
23593710 |
T |
|
| Q |
201 |
caagtggcccccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaagttggaaattcc------------agaacgttctgcatgaac |
288 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||| |
|
|
| T |
23593709 |
caagtggcctccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaaattggaagttccagaatgttctggagaacgttctgcatgaac |
23593610 |
T |
|
| Q |
289 |
aaaattcacttttttctcatccttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgtg |
384 |
Q |
| |
|
||||||||||||||||| || |||| || |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
23593609 |
aaaattcacttttttctaattcttgtgctccaagcaacaaaaacataagcacatgggctgtttttaacaaggaaaacacagctgtttttgtctgtg |
23593514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 40817510 - 40817123
Alignment:
| Q |
1 |
tcatcatgttccctcatgttgccaccagattacaactgnnnnnnnatcacgtgtgtttgtctcaaaaaggaaaggaacaacaagaatgttcttaagaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40817510 |
tcatcatgttccctcatgttgccaccagatcacaactgttttttcatcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaagaaca |
40817411 |
T |
|
| Q |
101 |
ttctccatgtggcaaattttacaacttggacattcttgctctcaaagcaacaaagtacaacacttgtagcttccaaagaagtgccaaacagctg----ta |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||| |||||||||| |||||||||| | |
|
|
| T |
40817410 |
ttctccatgtggcaaattttacaacttggacactcttgctctcaaagcaacaaaggacagcacttgtagctttcaaagaagtgtcaaacagctggaaaaa |
40817311 |
T |
|
| Q |
197 |
aaaacaagtggcccccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaagttggaaattccagaacgttctgcatgaacaaaattca |
296 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
40817310 |
aaaacaagtggcctccaaacttctacagcttgcattcacgcgtccaccttttctctttgcaaattggaagttccagaacgttctgcatgaacaaaattca |
40817211 |
T |
|
| Q |
297 |
cttttttctcatccttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgtg |
384 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40817210 |
cttttttctcattcttgcgctccaagcaacaaaaacataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgtg |
40817123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 55789224 - 55789611
Alignment:
| Q |
1 |
tcatcatgttccctcatgttgccaccagattacaactgnnnnnnnatcacgtgtgtttgtctcaaaaaggaaaggaacaacaagaatgttcttaagaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55789224 |
tcatcatgttccctcatgttgccaccagatcacaactgttttttcatcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaagaaca |
55789323 |
T |
|
| Q |
101 |
ttctccatgtggcaaattttacaacttggacattcttgctctcaaagcaacaaagtacaacacttgtagcttccaaagaagtgccaaacagctgtaaaaa |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
55789324 |
ttcttcatgtggcaaattttacaacttggacactcttgctctcaaagcaacaaaggacagcacttgtagctttcaaagaagtgccaaacagctgtaaaaa |
55789423 |
T |
|
| Q |
201 |
----caagtggcccccaaacttctacagcttgcattcacgtgtccacc-ttttctctttgcaagttggaaattccagaacgttctgcatgaacaaaattc |
295 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||| | |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
55789424 |
aaagcaagtggcctccaaacttctacagcttgcattcacgcgtccacctttttctctttgccaattggaagttccagaacgttctgcatgaacaaaattc |
55789523 |
T |
|
| Q |
296 |
acttttttctcatccttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgt |
383 |
Q |
| |
|
||||||||||||| ||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55789524 |
acttttttctcattcttgcactccaagcaacaaaaacataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgt |
55789611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 18867762 - 18868148
Alignment:
| Q |
1 |
tcatcatgttccctcatgttgccaccagattacaactgnnnnnnnatcacgtgtgtttgtctcaaaaaggaaaggaacaacaagaatgttcttaagaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18867762 |
tcatcatgttccctcatgttgccaccagatcacaactgttttttcatcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaagaaca |
18867861 |
T |
|
| Q |
101 |
ttctccatgtggcaaattttacaacttggacattcttgctctcaaagcaacaaagtacaacacttgtagcttccaaagaagtgccaaacagctgt-aaaa |
199 |
Q |
| |
|
|||||||||| | ||||||| ||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
18867862 |
ttctccatgtcgaaaattttgcaacttggacactctttctctcaaagcaacaaaggacaacacttgtagcttccaaagaagtgccaaacagctgtaaaaa |
18867961 |
T |
|
| Q |
200 |
acaagtggcccccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaagttggaaattccagaacgttctgcatgaacaaaattcac-t |
298 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| | |
|
|
| T |
18867962 |
acaagtggcctccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaagttggaaattccagaacgttctgtctgaacaaagttcactt |
18868061 |
T |
|
| Q |
299 |
tttttctcatccttgcgcaccaagcaacaaaaatataagcacatgggctg-tttttagcaaggaaaacacagctgtttttgtctgtg |
384 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
18868062 |
tttttctcattcttgcgcaccaagcaacaaaaacataagcacatgggctgttttttagcaaggaaaacacagctgtttttgtctgtg |
18868148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 13553796 - 13554191
Alignment:
| Q |
1 |
tcatcatgttccctcatgttgccaccagattacaactgnnnnnnnatcacgtgtgtttgtctcaaaaaggaaaggaacaacaagaatgttcttaagaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13553796 |
tcatcatgttccctcatgttgccaccagatcacaactgttttttcatcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaagaaca |
13553895 |
T |
|
| Q |
101 |
ttctccatgtggcaaattttacaacttggacattcttgctctcaaagcaacaaagtacaacacttgtagcttccaaagaagtgccaaacagctgtaaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
13553896 |
ttctccatgtggcaaattttacaacttggacactcttgctctcaaagcaacaaaggacagcacttgtagctttcaaagaagtgccaaacagctgtaaaaa |
13553995 |
T |
|
| Q |
201 |
caagtggcccccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaagttggaaattcc------------agaacgttctgcatgaac |
288 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||| |
|
|
| T |
13553996 |
caagtggcctccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaaattggaagttccagaacgttctggagaacgttctgcatgaac |
13554095 |
T |
|
| Q |
289 |
aaaattcacttttttctcatccttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgtg |
384 |
Q |
| |
|
|||||||||||||||||||| |||| || |||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
13554096 |
aaaattcacttttttctcattcttgtgctccaagcaacaaaaacataagcacatgggctgtttttaacaaggaaaacacagctatttttgtctgtg |
13554191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 310 - 383
Target Start/End: Original strand, 54624124 - 54624197
Alignment:
| Q |
310 |
cttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgt |
383 |
Q |
| |
|
||||||| |||||| ||||||| | ||||||||||||||||||| | ||||| ||||||||||| ||||||||| |
|
|
| T |
54624124 |
cttgcgcgccaagctacaaaaacacaagcacatgggctgtttttggaaaggacaacacagctgtatttgtctgt |
54624197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 307 - 383
Target Start/End: Complemental strand, 17530466 - 17530390
Alignment:
| Q |
307 |
atccttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgt |
383 |
Q |
| |
|
||||||| || |||||| ||||||| ||||||||||||||||||||| | ||||| |||||| |||| ||||||||| |
|
|
| T |
17530466 |
atccttgtgcgccaagctacaaaaacataagcacatgggctgtttttggaaaggacaacacaactgtatttgtctgt |
17530390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 307 - 383
Target Start/End: Complemental strand, 17535405 - 17535329
Alignment:
| Q |
307 |
atccttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgt |
383 |
Q |
| |
|
||||||| || |||||| ||||||| ||||||||||||||||||||| | ||||| |||||| |||| ||||||||| |
|
|
| T |
17535405 |
atccttgtgcgccaagctacaaaaacataagcacatgggctgtttttggaaaggacaacacaactgtatttgtctgt |
17535329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 307 - 383
Target Start/End: Original strand, 48978255 - 48978331
Alignment:
| Q |
307 |
atccttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgt |
383 |
Q |
| |
|
|||||||||| |||||| ||||||| | ||||||||||||||||||| | ||||| ||||||||||| ||| ||||| |
|
|
| T |
48978255 |
atccttgcgcgccaagctacaaaaacacaagcacatgggctgtttttggaaaggacaacacagctgtatttttctgt |
48978331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 307 - 383
Target Start/End: Original strand, 48987795 - 48987871
Alignment:
| Q |
307 |
atccttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgt |
383 |
Q |
| |
|
|||||||||| |||||| ||||||| | ||||||||||||||||||| | ||||| |||||| |||| ||| ||||| |
|
|
| T |
48987795 |
atccttgcgcgccaagctacaaaaacacaagcacatgggctgtttttggaaaggacaacacaactgtatttttctgt |
48987871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 243; Significance: 1e-134; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 46 - 384
Target Start/End: Original strand, 13459250 - 13459586
Alignment:
| Q |
46 |
atcacgtgtgtttgtctcaaaaaggaaaggaacaacaagaatgttcttaagaacattctccatgtggcaaattttacaacttggacattcttgctctcaa |
145 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13459250 |
atcacgcgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaagaacattctccatgtggcaaattttacaacttggacattcttgctctcaa |
13459349 |
T |
|
| Q |
146 |
agcaacaaagtacaacacttgtagcttccaaagaagtgccaaacagctgtaaaaacaagtggcccccaaacttctacagcttgcattcacgtgtccacct |
245 |
Q |
| |
|
|||||||||| | |||||||||||||| |||||||||| ||||||| |||||||| || |||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
13459350 |
agcaacaaaggaaaacacttgtagctttcaaagaagtgtcaaacagttgtaaaaa-aaacggcctccaaacttctacagcttgcattcacgtgtcaacct |
13459448 |
T |
|
| Q |
246 |
tttctctttgcaagttggaaattccagaacgttctgcatgaacaaaattcacttttttctcatccttgcgcaccaagcaacaaaaatataagcacatggg |
345 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||||||||| || |||||||||| |||||||||||||||||||||| ||||||||||| | |
|
|
| T |
13459449 |
tttctctttgcaagttggaagttccagaacgttatgcatgaacaaaatt-acatttttctcattcttgcgcaccaagcaacaaaaacataagcacatgag |
13459547 |
T |
|
| Q |
346 |
ctgtttttagcaaggaaaacacagctgtttttgtctgtg |
384 |
Q |
| |
|
||||||||||||||||||||||| || ||||||| |||| |
|
|
| T |
13459548 |
ctgtttttagcaaggaaaacacaactatttttgtttgtg |
13459586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 347171 - 346826
Alignment:
| Q |
1 |
tcatcatgttccctcatgttgccaccagattacaactgnnnnnnnatcacgtgtgtttgtctcaaaaaggaaaggaacaacaagaatgttcttaagaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
347171 |
tcatcatgttccctcatgttgccaccagatcgcaactgttttttcatcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaagaaca |
347072 |
T |
|
| Q |
101 |
ttctccatgtggcaaattttacaacttggacattcttgctc-tcaaagcaacaaagtacaacacttgtagcttccaaagaagtgccaaacagctgt--aa |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||| |||||||||||| |||||||||||||||||||||| || |
|
|
| T |
347071 |
ttctccatgtggcaaattttacaacttggacactcttgctcttcaaagcaacaaaggacagcacttgtagctttcaaagaagtgccaaacagctgtaaaa |
346972 |
T |
|
| Q |
198 |
aaacaagtggcccccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaagttggaaattcc------------agaacgttctgcatg |
285 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||| | |
|
|
| T |
346971 |
aaacaagtggcctccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaaattggaagttccagaacgttctagagaacgttctgcacg |
346872 |
T |
|
| Q |
286 |
aacaaaattcacttttttctcatccttgcgcaccaagcaacaaaaa |
331 |
Q |
| |
|
||||||||||||||||||||||| |||| || |||||||||||||| |
|
|
| T |
346871 |
aacaaaattcacttttttctcattcttgtgctccaagcaacaaaaa |
346826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 361819 - 361474
Alignment:
| Q |
1 |
tcatcatgttccctcatgttgccaccagattacaactgnnnnnnnatcacgtgtgtttgtctcaaaaaggaaaggaacaacaagaatgttcttaagaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
361819 |
tcatcatgttccctcatgttgccaccagatcgcaactgttttttcatcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaagaaca |
361720 |
T |
|
| Q |
101 |
ttctccatgtggcaaattttacaacttggacattcttgctc-tcaaagcaacaaagtacaacacttgtagcttccaaagaagtgccaaacagctgt--aa |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||| |||||||||||| |||||||||||||||||||||| || |
|
|
| T |
361719 |
ttctccatgtggcaaattttacaacttggacactcttgctcttcaaagcaacaaaggacagcacttgtagctttcaaagaagtgccaaacagctgtaaaa |
361620 |
T |
|
| Q |
198 |
aaacaagtggcccccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaagttggaaattcc------------agaacgttctgcatg |
285 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||| | |
|
|
| T |
361619 |
aaacaagtggcctccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaaattggaagttccagaacgttctggagaacgttctgcacg |
361520 |
T |
|
| Q |
286 |
aacaaaattcacttttttctcatccttgcgcaccaagcaacaaaaa |
331 |
Q |
| |
|
||||||||||||||||||||||| |||| || |||||||||||||| |
|
|
| T |
361519 |
aacaaaattcacttttttctcattcttgtgctccaagcaacaaaaa |
361474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 307 - 383
Target Start/End: Complemental strand, 346553 - 346477
Alignment:
| Q |
307 |
atccttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgt |
383 |
Q |
| |
|
|||||||||| |||||| ||||||| | ||||||||||||||||||| | |||| ||||||||||| ||||||||| |
|
|
| T |
346553 |
atccttgcgctccaagctacaaaaacacaagcacatgggctgtttttggagaggacaacacagctgtatttgtctgt |
346477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 307 - 383
Target Start/End: Original strand, 5600161 - 5600237
Alignment:
| Q |
307 |
atccttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgt |
383 |
Q |
| |
|
|||||||||| |||||| ||||||| | ||||||||||||||||||| | ||||| ||||||||||| ||| ||||| |
|
|
| T |
5600161 |
atccttgcgcgccaagctacaaaaacacaagcacatgggctgtttttggaaaggacaacacagctgtatttttctgt |
5600237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 307 - 383
Target Start/End: Original strand, 5609807 - 5609883
Alignment:
| Q |
307 |
atccttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgt |
383 |
Q |
| |
|
|||||||||| |||||| ||||||| | ||||||||||||||||||| | ||||| ||||||||||| ||| ||||| |
|
|
| T |
5609807 |
atccttgcgcgccaagctacaaaaacacaagcacatgggctgtttttggaaaggacaacacagctgtatttttctgt |
5609883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 307 - 383
Target Start/End: Complemental strand, 361201 - 361125
Alignment:
| Q |
307 |
atccttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgt |
383 |
Q |
| |
|
|||||||||| |||||| ||||||| | ||||||||| ||||||||| | |||| ||||||||||| ||||||||| |
|
|
| T |
361201 |
atccttgcgctccaagctacaaaaacacaagcacatgagctgtttttggagaggacaacacagctgtatttgtctgt |
361125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 373
Target Start/End: Complemental strand, 31151240 - 31151173
Alignment:
| Q |
307 |
atccttgcgcaccaagcaacaaaaat-ataagcacatgggctgtttttagcaaggaaaacacagctgt |
373 |
Q |
| |
|
|||||||||| |||||| ||||||| | ||||||||||||||||||| | ||||| ||||||||||| |
|
|
| T |
31151240 |
atccttgcgcgccaagctacaaaaaacacaagcacatgggctgtttttggaaaggacaacacagctgt |
31151173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 368
Target Start/End: Complemental strand, 1694282 - 1694225
Alignment:
| Q |
311 |
ttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacaca |
368 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||| | | ||||||| ||||| |||||| |
|
|
| T |
1694282 |
ttgcgcgccaagcaacaaaaacataagcacatgagatatttttagaaaggacaacaca |
1694225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0508 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0508
Description:
Target: scaffold0508; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 144 - 281
Target Start/End: Original strand, 12249 - 12388
Alignment:
| Q |
144 |
aaagcaacaaagtacaacacttgtagcttccaaagaagtgccaaacagctgtaaaa--acaagtggcccccaaacttctacagcttgcattcacgtgtcc |
241 |
Q |
| |
|
|||||||||||| ||| |||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
12249 |
aaagcaacaaaggacagcacttgtagctttcaaagaagtgccaaacagctgtaaaaaaacaagtggcctccaaacttctacagcttgcattcacgtgtcc |
12348 |
T |
|
| Q |
242 |
accttttctctttgcaagttggaaattccagaacgttctg |
281 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
12349 |
accttttctctttgcaaattggaagttccagaacgttctg |
12388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 307 - 383
Target Start/End: Original strand, 1790584 - 1790660
Alignment:
| Q |
307 |
atccttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgt |
383 |
Q |
| |
|
|||||||||| |||||| ||||||| | ||||||||||||||||||| | ||||| ||||||||||| ||| ||||| |
|
|
| T |
1790584 |
atccttgcgcgccaagctacaaaaacacaagcacatgggctgtttttggaaaggacaacacagctgtatttttctgt |
1790660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 307 - 383
Target Start/End: Original strand, 1800078 - 1800154
Alignment:
| Q |
307 |
atccttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgt |
383 |
Q |
| |
|
|||||||||| |||||| ||||||| | ||||||||||||||||||| | ||||| ||||||||||| ||| ||||| |
|
|
| T |
1800078 |
atccttgcgcgccaagctacaaaaacacaagcacatgggctgtttttggaaaggacaacacagctgtatttttctgt |
1800154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 307 - 383
Target Start/End: Original strand, 22631986 - 22632061
Alignment:
| Q |
307 |
atccttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgt |
383 |
Q |
| |
|
||||||| || ||||| ||||||| | ||||||||||||||||||| ||||||| ||||||||||| ||||||||| |
|
|
| T |
22631986 |
atccttgtgcgccaagttacaaaaacacaagcacatgggctgttttt-gcaaggacaacacagctgtatttgtctgt |
22632061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0281 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0281
Description:
Target: scaffold0281; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 306 - 383
Target Start/End: Original strand, 23640 - 23717
Alignment:
| Q |
306 |
catccttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgt |
383 |
Q |
| |
|
||||||||||| |||||| ||||||| | ||||||||||||||||| | ||||| ||||||||||| ||||||||| |
|
|
| T |
23640 |
catccttgcgcgccaagctacaaaaacacttgcacatgggctgtttttggaaaggacaacacagctgtatttgtctgt |
23717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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