View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0157_low_35 (Length: 260)
Name: NF0157_low_35
Description: NF0157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0157_low_35
Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 22016577 - 22016815
Alignment:
Q
1
taaggttacttttgtaagtgctgctttgtgatgacttagcatagtgaatttgaaattatctcttactatgcaattcctgatcgatttttgtgttctacgc
100
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
22016577
taaggttacttttgtaagtgctgctttgtgatgacttagcatagtgaatttgaaattatctcttactatgcaattcctgatcgatttttgtgttctacgc
22016676
T
Q
101
tatttaccgaagcctcctcagatgaattgtctggatgaaattcaaccttattgtgaagagcaagcaaaagatgatctatccatggtagaaactgaacgta
200
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
22016677
tatttaccgaagcctcctcagatgaattgtctggatgaaattcaaccttattgtgaagagcaagcaaaagatgatctatccatggtagaaactgaacgta
22016776
T
Q
201
atgaagggacagataataatgaaaataatgctgatgatg
239
Q
||||||||| |||||||||||||||||||||||||||||
T
22016777
atgaagggaaagataataatgaaaataatgctgatgatg
22016815
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 203 - 237
Target Start/End: Original strand, 22016830 - 22016864
Alignment:
Q
203
gaagggacagataataatgaaaataatgctgatga
237
Q
|||||||||||||||||||||||||||||||||||
T
22016830
gaagggacagataataatgaaaataatgctgatga
22016864
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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