View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0157_low_38 (Length: 251)
Name: NF0157_low_38
Description: NF0157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0157_low_38 |
 | |
|
| [»] scaffold0129 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 6 - 234
Target Start/End: Original strand, 3703970 - 3704198
Alignment:
| Q |
6 |
agcagcagagacctcacggtactcattaccgagaccattcaaagtgtggataacaagatccacatcatcaaggggagagttgatgatggctaattcatct |
105 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3703970 |
agcagcagtgacctcacggtactcattaccgagaccattcaaagtgtggataacaagatccacatcatcaaggggagagttgatgatggctaattcatct |
3704069 |
T |
|
| Q |
106 |
gataaagccttgataccatgaaggtattcagagatggatttcgatccttttgtggatcgagaaagtctttctttgaggtgcatgattcttgcacgagttt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3704070 |
gataaagccttgataccatgaaggtattcagagatggatttcgatccttttgtggatcgagaaagtctttctttgaggtgcatgattcttgcacgagttt |
3704169 |
T |
|
| Q |
206 |
tgcttgcaaacatcttagtgatgatgtcc |
234 |
Q |
| |
|
||||||||||||||||||||| ||||||| |
|
|
| T |
3704170 |
tgcttgcaaacatcttagtgaggatgtcc |
3704198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 6 - 234
Target Start/End: Original strand, 20098918 - 20099146
Alignment:
| Q |
6 |
agcagcagagacctcacggtactcattaccgagaccattcaaagtgtggataacaagatccacatcatcaaggggagagttgatgatggctaattcatct |
105 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20098918 |
agcagcagtgacctcacggtactcattaccgagaccattcaaagtgtggataacaagatccacatcatcaaggggagagttgatgatggctaattcatct |
20099017 |
T |
|
| Q |
106 |
gataaagccttgataccatgaaggtattcagagatggatttcgatccttttgtggatcgagaaagtctttctttgaggtgcatgattcttgcacgagttt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20099018 |
gataaagccttgataccatgaaggtattcagagatggattttgatccttttgtggatcgagaaagtctttctttgaggtgcatgattcttgcacgagttt |
20099117 |
T |
|
| Q |
206 |
tgcttgcaaacatcttagtgatgatgtcc |
234 |
Q |
| |
|
||||||||||||||||||||| ||||||| |
|
|
| T |
20099118 |
tgcttgcaaacatcttagtgaggatgtcc |
20099146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 218
Target Start/End: Complemental strand, 45187619 - 45187572
Alignment:
| Q |
171 |
tctttctttgaggtgcatgattcttgcacgagttttgcttgcaaacat |
218 |
Q |
| |
|
|||||||||||||||||| || | ||||||||||||||| |||||||| |
|
|
| T |
45187619 |
tctttctttgaggtgcataatacgtgcacgagttttgctggcaaacat |
45187572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 9039111 - 9039175
Alignment:
| Q |
40 |
ccattcaaagtgtggataacaagatccacatcatcaaggggagagttgatgatggctaattcatc |
104 |
Q |
| |
|
||||||| ||||| || ||||||||||||||||| | || || |||||||||||||||||||| |
|
|
| T |
9039111 |
ccattcagggtgtgaatgacaagatccacatcatccaatggtgaattgatgatggctaattcatc |
9039175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 6 - 234
Target Start/End: Complemental strand, 32069265 - 32069037
Alignment:
| Q |
6 |
agcagcagagacctcacggtactcattaccgagaccattcaaagtgtggataacaagatccacatcatcaaggggagagttgatgatggctaattcatct |
105 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32069265 |
agcagcagtgacctcacggtactcattaccgagaccattcaaagtgtggataacaagatccacatcatcaaggggagagttgatgatggctaattcatct |
32069166 |
T |
|
| Q |
106 |
gataaagccttgataccatgaaggtattcagagatggatttcgatccttttgtggatcgagaaagtctttctttgaggtgcatgattcttgcacgagttt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
32069165 |
gataaagccttgataccatgaaggtattcagagatggattttgatccttttgtggatcgagaaagtcttcctttgaggtgcatgattcttgcacgagttt |
32069066 |
T |
|
| Q |
206 |
tgcttgcaaacatcttagtgatgatgtcc |
234 |
Q |
| |
|
||||||||||||||||||||| ||||||| |
|
|
| T |
32069065 |
tgcttgcaaacatcttagtgaggatgtcc |
32069037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 226
Target Start/End: Original strand, 15173 - 15297
Alignment:
| Q |
106 |
gataaagccttgataccatgaaggtattcagagatggatttcgatccttttgtggatc----gagaaagtctttctttgaggtgcatgattcttgcacga |
201 |
Q |
| |
|
||||||||||| |||| ||||||||||||||| |||||||| |||| ||| || ||| | | ||||| | ||| |||| ||||||| ||||| || |
|
|
| T |
15173 |
gataaagccttcatactatgaaggtattcagatatggattttgatcttttgatgaatctatatatagagtctcttttttaggtacatgattattgcatga |
15272 |
T |
|
| Q |
202 |
gttttgcttgcaaacatcttagtga |
226 |
Q |
| |
|
||| ||||||||||||||| ||||| |
|
|
| T |
15273 |
gttatgcttgcaaacatctcagtga |
15297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1113 times since January 2019
Visitors: 2244