View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0157_low_39 (Length: 251)

Name: NF0157_low_39
Description: NF0157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0157_low_39
NF0157_low_39
[»] chr7 (13 HSPs)
chr7 (109-216)||(20597807-20597914)
chr7 (109-179)||(9802651-9802721)
chr7 (109-217)||(3779286-3779394)
chr7 (109-177)||(15304117-15304185)
chr7 (138-207)||(19416739-19416808)
chr7 (109-193)||(12223046-12223130)
chr7 (133-209)||(9065008-9065084)
chr7 (148-207)||(16812441-16812501)
chr7 (109-179)||(9762159-9762229)
chr7 (134-168)||(16411456-16411490)
chr7 (118-167)||(2501605-2501654)
chr7 (133-185)||(1878895-1878947)
chr7 (109-157)||(13263306-13263354)
[»] scaffold0606 (1 HSPs)
scaffold0606 (120-209)||(4981-5070)
[»] chr8 (7 HSPs)
chr8 (109-214)||(17879100-17879205)
chr8 (134-193)||(17687439-17687498)
chr8 (118-193)||(24498726-24498801)
chr8 (133-214)||(15598255-15598337)
chr8 (118-172)||(24634828-24634882)
chr8 (119-160)||(21287923-21287964)
chr8 (119-160)||(45568507-45568548)
[»] scaffold0340 (1 HSPs)
scaffold0340 (109-209)||(17439-17539)
[»] chr2 (5 HSPs)
chr2 (133-217)||(33240175-33240259)
chr2 (133-217)||(33248096-33248180)
chr2 (134-208)||(16735548-16735622)
chr2 (148-209)||(40202959-40203020)
chr2 (109-167)||(25918228-25918286)
[»] chr5 (3 HSPs)
chr5 (109-208)||(12078309-12078407)
chr5 (122-193)||(26119189-26119260)
chr5 (119-160)||(32160273-32160314)
[»] chr1 (6 HSPs)
chr1 (118-192)||(18515486-18515560)
chr1 (120-208)||(23917304-23917394)
chr1 (116-193)||(25398861-25398938)
chr1 (119-162)||(21543563-21543606)
chr1 (109-159)||(47194833-47194883)
chr1 (109-193)||(22639744-22639827)
[»] chr6 (4 HSPs)
chr6 (120-209)||(12183480-12183569)
chr6 (156-209)||(13242687-13242740)
chr6 (148-193)||(31720232-31720277)
chr6 (109-193)||(14757808-14757891)
[»] chr3 (10 HSPs)
chr3 (134-207)||(19431878-19431951)
chr3 (134-190)||(1463816-1463872)
chr3 (118-214)||(7921292-7921387)
chr3 (134-193)||(17769626-17769685)
chr3 (134-193)||(19070927-19070986)
chr3 (134-209)||(19225269-19225344)
chr3 (118-185)||(16093923-16093990)
chr3 (119-162)||(45862180-45862223)
chr3 (109-162)||(13953758-13953811)
chr3 (119-160)||(13953790-13953831)
[»] chr4 (4 HSPs)
chr4 (109-193)||(24619141-24619225)
chr4 (120-206)||(5902137-5902223)
chr4 (148-214)||(15193199-15193265)
chr4 (137-193)||(10328915-10328971)
[»] scaffold1339 (1 HSPs)
scaffold1339 (109-209)||(1704-1805)
[»] scaffold0003 (1 HSPs)
scaffold0003 (134-168)||(168-202)
[»] scaffold0908 (1 HSPs)
scaffold0908 (109-162)||(4461-4514)
[»] scaffold0220 (1 HSPs)
scaffold0220 (109-162)||(2346-2399)
[»] scaffold0211 (1 HSPs)
scaffold0211 (119-160)||(19-60)
[»] scaffold0132 (1 HSPs)
scaffold0132 (119-160)||(38627-38668)
[»] scaffold0084 (1 HSPs)
scaffold0084 (119-160)||(930-971)


Alignment Details
Target: chr7 (Bit Score: 96; Significance: 3e-47; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 109 - 216
Target Start/End: Complemental strand, 20597914 - 20597807
Alignment:
Q  109 tcttgcctatgtgcttgagcatagtaagtctcttgctaatgtgcttgagcaattgtaatcttgtatgattacagtgacaaatctcgcgtaagtgacaagg 208  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  20597914 tcttgcctatgtggttgagcatagtaagtctcttgctaatgtgcttgagcaattgtaatcttgtatgattatagtgacaaatctcgtgtaagtgacaagg 20597815  T
Q  209 gcactgaa 216  Q
    ||||||||    
T  20597814 gcactgaa 20597807  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 109 - 179
Target Start/End: Complemental strand, 9802721 - 9802651
Alignment:
Q  109 tcttgcctatgtgcttgagcatagtaagtctcttgctaatgtgcttgagcaattgtaatcttgtatgatta 179  Q
    |||||| | ||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||    
T  9802721 tcttgcttgtgtgcttgagcataggaagtctcttgcttatgtgcttgagcaattgtaatcttgtgtgatta 9802651  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 109 - 217
Target Start/End: Original strand, 3779286 - 3779394
Alignment:
Q  109 tcttgcctatgtgcttgagcatagtaagtctcttgctaatgtgcttgagcaattgtaatcttgtatgattacagtgacaaatctcgcgtaagtgacaagg 208  Q
    |||||| | ||||||||||||||| |||| |||||||  | ||||||||||||||||||| ||| |||||| ||||| |||||||  |||||||||| ||    
T  3779286 tcttgcttgtgtgcttgagcataggaagtatcttgcttgtttgcttgagcaattgtaatcatgtttgattatagtgaaaaatctcatgtaagtgacaggg 3779385  T
Q  209 gcactgaac 217  Q
    | |||||||    
T  3779386 ggactgaac 3779394  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 177
Target Start/End: Complemental strand, 15304185 - 15304117
Alignment:
Q  109 tcttgcctatgtgcttgagcatagtaagtctcttgctaatgtgcttgagcaattgtaatcttgtatgat 177  Q
    |||||| | ||||||||||||||  ||||||||||||  ||||||||||||||||||||||||| ||||    
T  15304185 tcttgcttgtgtgcttgagcatatgaagtctcttgcttgtgtgcttgagcaattgtaatcttgtgtgat 15304117  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 207
Target Start/End: Complemental strand, 19416808 - 19416739
Alignment:
Q  138 ctcttgctaatgtgcttgagcaattgtaatcttgtatgattacagtgacaaatctcgcgtaagtgacaag 207  Q
    ||||||||  ||||||||||||||||||||||||| |||||| ||||| |||||||   |||||||||||    
T  19416808 ctcttgcttgtgtgcttgagcaattgtaatcttgtgtgattatagtgaaaaatctcttataagtgacaag 19416739  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 109 - 193
Target Start/End: Original strand, 12223046 - 12223130
Alignment:
Q  109 tcttgcctatgtgcttgagcatagtaagtctcttgctaatgtgcttgagcaattgtaatcttgtatgattacagtgacaaatctc 193  Q
    |||||| | |||||||||| ||   ||||||||||||  |||| |||||||||||||||||||| |||||| ||||| |||||||    
T  12223046 tcttgcttgtgtgcttgagtatttaaagtctcttgcttgtgtgtttgagcaattgtaatcttgtgtgattatagtgaaaaatctc 12223130  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 209
Target Start/End: Complemental strand, 9065084 - 9065008
Alignment:
Q  133 taagtctcttgctaatgtgcttgagcaattgtaatcttgtatgattacagtgacaaatctcgcgtaagtgacaaggg 209  Q
    ||||| |||||||  ||||||||||||||||||||||||  |||||| ||||| || ||||  ||| ||||||||||    
T  9065084 taagtatcttgcttgtgtgcttgagcaattgtaatcttgagtgattatagtgaaaagtctcttgtaggtgacaaggg 9065008  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 207
Target Start/End: Complemental strand, 16812501 - 16812441
Alignment:
Q  148 tgtgcttgagcaattgtaatc-ttgtatgattacagtgacaaatctcgcgtaagtgacaag 207  Q
    |||| |||||||||||||||| ||||||||||| ||||| |||||||  ||||||||||||    
T  16812501 tgtgtttgagcaattgtaatccttgtatgattatagtgaaaaatctcttgtaagtgacaag 16812441  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 179
Target Start/End: Complemental strand, 9762229 - 9762159
Alignment:
Q  109 tcttgcctatgtgcttgagcatagtaagtctcttgctaatgtgcttgagcaattgtaatcttgtatgatta 179  Q
    |||||| | ||| ||||||||||  ||||||||||||  ||||||| | ||||||||||||||| ||||||    
T  9762229 tcttgcttgtgtacttgagcatatgaagtctcttgcttgtgtgcttaaccaattgtaatcttgtgtgatta 9762159  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 168
Target Start/End: Complemental strand, 16411490 - 16411456
Alignment:
Q  134 aagtctcttgctaatgtgcttgagcaattgtaatc 168  Q
    ||||||||||||| |||||||||||||||||||||    
T  16411490 aagtctcttgctattgtgcttgagcaattgtaatc 16411456  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 167
Target Start/End: Original strand, 2501605 - 2501654
Alignment:
Q  118 tgtgcttgagcatagtaagtctcttgctaatgtgcttgagcaattgtaat 167  Q
    |||| |||||||||| || |||||||||  ||||||||||||||||||||    
T  2501605 tgtgtttgagcatagaaaatctcttgcttgtgtgcttgagcaattgtaat 2501654  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 1878895 - 1878947
Alignment:
Q  133 taagtctcttgctaatgtgcttgagcaattgtaatcttgtatgattacagtga 185  Q
    |||||||||||||  |||||||||| |||||||||||| | |||||| |||||    
T  1878895 taagtctcttgcttctgtgcttgagaaattgtaatcttatgtgattatagtga 1878947  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 13263354 - 13263306
Alignment:
Q  109 tcttgcctatgtgcttgagcatagtaagtctcttgctaatgtgcttgag 157  Q
    |||||| | ||||||||||||||| ||||||||||||| ||| ||||||    
T  13263354 tcttgcttttgtgcttgagcataggaagtctcttgctagtgtacttgag 13263306  T

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Target: scaffold0606 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0606
Description:

Target: scaffold0606; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 120 - 209
Target Start/End: Complemental strand, 5070 - 4981
Alignment:
Q  120 tgcttgagcatagtaagtctcttgctaatgtgcttgagcaattgtaatcttgtatgattacagtgacaaatctcgcgtaagtgacaaggg 209  Q
    ||||||||||||| ||||||||||||  ||| |||||||||||||||||||||||||||| ||||| |||||||  | ||||||||||||    
T  5070 tgcttgagcataggaagtctcttgcttgtgtccttgagcaattgtaatcttgtatgattatagtgaaaaatctcttgcaagtgacaaggg 4981  T

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Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 109 - 214
Target Start/End: Complemental strand, 17879205 - 17879100
Alignment:
Q  109 tcttgcctatgtgcttgagcatagtaagtctcttgctaatgtgcttgagcaattgtaatcttgtatgattacagtgacaaatctcgcgtaagtgacaagg 208  Q
    |||||| ||||||||||||||| | ||||||||||||  ||||||||||||||||||||||||| ||||||   ||| |||||||  |||||||||||||    
T  17879205 tcttgcttatgtgcttgagcattgaaagtctcttgcttgtgtgcttgagcaattgtaatcttgtgtgattattatgaaaaatctcttgtaagtgacaagg 17879106  T
Q  209 gcactg 214  Q
    | ||||    
T  17879105 ggactg 17879100  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 193
Target Start/End: Complemental strand, 17687498 - 17687439
Alignment:
Q  134 aagtctcttgctaatgtgcttgagcaattgtaatcttgtatgattacagtgacaaatctc 193  Q
    ||||||||||||  ||||||||||||||||||||||| | |||||| ||||| |||||||    
T  17687498 aagtctcttgcttgtgtgcttgagcaattgtaatcttatgtgattatagtgaaaaatctc 17687439  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 193
Target Start/End: Original strand, 24498726 - 24498801
Alignment:
Q  118 tgtgcttgagcatagtaagtctcttgctaatgtgcttgagcaattgtaatcttgtatgattacagtgacaaatctc 193  Q
    |||||||||||||   |||| |||||||  ||||||||||||||||||||||||| |||||| ||||  |||||||    
T  24498726 tgtgcttgagcatttgaagtatcttgcttgtgtgcttgagcaattgtaatcttgtgtgattatagtggaaaatctc 24498801  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 133 - 214
Target Start/End: Complemental strand, 15598337 - 15598255
Alignment:
Q  133 taagtctcttgctaatgtgcttgagcaattgtaatcttgtatgattacagt-gacaaatctcgcgtaagtgacaagggcactg 214  Q
    |||||||||||||  ||||||||| ||||||||||||||| |||||| |||  | |||||||  |||||||||||||| ||||    
T  15598337 taagtctcttgcttgtgtgcttgaccaattgtaatcttgtgtgattatagtaaaaaaatctcttgtaagtgacaagggaactg 15598255  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 24634882 - 24634828
Alignment:
Q  118 tgtgcttgagcatagtaagtctcttgctaatgtgcttgagcaattgtaatcttgt 172  Q
    ||||||||||||||| ||||||||| ||  |||||||||| | ||||||||||||    
T  24634882 tgtgcttgagcataggaagtctcttacttgtgtgcttgagaatttgtaatcttgt 24634828  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 21287964 - 21287923
Alignment:
Q  119 gtgcttgagcatagtaagtctcttgctaatgtgcttgagcaa 160  Q
    |||||||||||||| ||||||||||||  |||||||||||||    
T  21287964 gtgcttgagcataggaagtctcttgcttgtgtgcttgagcaa 21287923  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 45568507 - 45568548
Alignment:
Q  119 gtgcttgagcatagtaagtctcttgctaatgtgcttgagcaa 160  Q
    |||||||||||||| ||||||||||||  |||||||||||||    
T  45568507 gtgcttgagcataggaagtctcttgcttgtgtgcttgagcaa 45568548  T

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Target: scaffold0340 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 109 - 209
Target Start/End: Complemental strand, 17539 - 17439
Alignment:
Q  109 tcttgcctatgtgcttgagcatagtaagtctcttgctaatgtgcttgagcaattgtaatcttgtatgattacagtgacaaatctcgcgtaagtgacaagg 208  Q
    |||||| ||||||||||||||||| |||||||||  |  || |||||||||||||||||||||| |||||| ||||| |||||||  |||||||||||||    
T  17539 tcttgcttatgtgcttgagcatagaaagtctcttttttgtgcgcttgagcaattgtaatcttgtgtgattatagtgaaaaatctcttgtaagtgacaagg 17440  T
Q  209 g 209  Q
    |    
T  17439 g 17439  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 133 - 217
Target Start/End: Complemental strand, 33240259 - 33240175
Alignment:
Q  133 taagtctcttgctaatgtgcttgagcaattgtaatcttgtatgattacagtgacaaatctcgcgtaagtgacaagggcactgaac 217  Q
    |||||||||||||  ||||||||||||||||||||||||| |||||| ||||| |||||||  |||||||||||||| |||||||    
T  33240259 taagtctcttgcttgtgtgcttgagcaattgtaatcttgtgtgattatagtgaaaaatctcttgtaagtgacaaggggactgaac 33240175  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 133 - 217
Target Start/End: Complemental strand, 33248180 - 33248096
Alignment:
Q  133 taagtctcttgctaatgtgcttgagcaattgtaatcttgtatgattacagtgacaaatctcgcgtaagtgacaagggcactgaac 217  Q
    |||||||||||||  ||||||||||||||||||||||||| |||||| ||||| |||||||  |||||||||||||| |||||||    
T  33248180 taagtctcttgcttgtgtgcttgagcaattgtaatcttgtgtgattatagtgaaaaatctcttgtaagtgacaaggggactgaac 33248096  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 208
Target Start/End: Original strand, 16735548 - 16735622
Alignment:
Q  134 aagtctcttgctaatgtgcttgagcaattgtaatcttgtatgattacagtgacaaatctcgcgtaagtgacaagg 208  Q
    ||||||||||||  ||||||| ||||||||||||||||| |||||| ||||| |||||||  |||||||||||||    
T  16735548 aagtctcttgcttgtgtgcttaagcaattgtaatcttgtgtgattatagtgaaaaatctcttgtaagtgacaagg 16735622  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 40202959 - 40203020
Alignment:
Q  148 tgtgcttgagcaattgtaatcttgtatgattacagtgacaaatctcgcgtaagtgacaaggg 209  Q
    ||||||||| ||||||||||||||| |||||| ||||| |||||||  ||||||||||||||    
T  40202959 tgtgcttgaacaattgtaatcttgtgtgattatagtgaaaaatctcatgtaagtgacaaggg 40203020  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 167
Target Start/End: Complemental strand, 25918286 - 25918228
Alignment:
Q  109 tcttgcctatgtgcttgagcatagtaagtctcttgctaatgtgcttgagcaattgtaat 167  Q
    |||||| | |||||||||||||||||  |||||||||  |||||||||||| |||||||    
T  25918286 tcttgcttttgtgcttgagcatagtagatctcttgcttgtgtgcttgagcatttgtaat 25918228  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 109 - 208
Target Start/End: Complemental strand, 12078407 - 12078309
Alignment:
Q  109 tcttgcctatgtgcttgagcatagtaagtctcttgctaatgtgcttgagcaattgtaatcttgtatgattacagtgacaaatctcgcgtaagtgacaagg 208  Q
    |||||| | ||||||||||||||| ||||||||||||  ||||||||||||||||||||||||  | |||| ||||| |||||||  |||||||||||||    
T  12078407 tcttgcttgtgtgcttgagcataggaagtctcttgcttgtgtgcttgagcaattgtaatcttg-gtaattatagtgaaaaatctcttgtaagtgacaagg 12078309  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 122 - 193
Target Start/End: Original strand, 26119189 - 26119260
Alignment:
Q  122 cttgagcatagtaagtctcttgctaatgtgcttgagcaattgtaatcttgtatgattacagtgacaaatctc 193  Q
    ||||||||||  ||||||||| || |||| ||||||||||||||||||||| |||||| ||||| |||||||    
T  26119189 cttgagcataaaaagtctctttcttatgttcttgagcaattgtaatcttgtgtgattatagtgaaaaatctc 26119260  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 32160314 - 32160273
Alignment:
Q  119 gtgcttgagcatagtaagtctcttgctaatgtgcttgagcaa 160  Q
    |||||||||||||| ||||||||||||  |||||||||||||    
T  32160314 gtgcttgagcataggaagtctcttgcttgtgtgcttgagcaa 32160273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 118 - 192
Target Start/End: Complemental strand, 18515560 - 18515486
Alignment:
Q  118 tgtgcttgagcatagtaagtctcttgctaatgtgcttgagcaattgtaatcttgtatgattacagtgacaaatct 192  Q
    ||||||||||||||| |||||| |||||  ||||||||||||||||||||||||| |||||| ||||| ||||||    
T  18515560 tgtgcttgagcatagaaagtcttttgcttgtgtgcttgagcaattgtaatcttgtgtgattatagtgaaaaatct 18515486  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 120 - 208
Target Start/End: Complemental strand, 23917394 - 23917304
Alignment:
Q  120 tgcttgagcatagtaagtctcttgctaatgtgcttgagcaattgtaatcttgtatgattacagtg--acaaatctcgcgtaagtgacaagg 208  Q
    ||||||||||||  ||||||||||||  ||||||||||||||||||||||||| |||||| ||||  | |||||||  |||||||||||||    
T  23917394 tgcttgagcataagaagtctcttgcttgtgtgcttgagcaattgtaatcttgtgtgattatagtgaaaaaaatctcttgtaagtgacaagg 23917304  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 193
Target Start/End: Complemental strand, 25398938 - 25398861
Alignment:
Q  116 tatgtgcttgagcatagtaagtctcttgctaatgtgcttgagcaattgtaatcttgtatgattacagtgacaaatctc 193  Q
    ||||||||||||||||| |||||| ||  |  ||||||||||||||||||||||||| |||||  ||||| |||||||    
T  25398938 tatgtgcttgagcataggaagtcttttagttgtgtgcttgagcaattgtaatcttgtgtgattgtagtgaaaaatctc 25398861  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 162
Target Start/End: Complemental strand, 21543606 - 21543563
Alignment:
Q  119 gtgcttgagcatagtaagtctcttgctaatgtgcttgagcaatt 162  Q
    |||||||||||||| ||||||||||||  |||||||||||||||    
T  21543606 gtgcttgagcatagaaagtctcttgcttgtgtgcttgagcaatt 21543563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 47194883 - 47194833
Alignment:
Q  109 tcttgcctatgtgcttgagcatagtaagtctcttgctaatgtgcttgagca 159  Q
    |||||||||||||||||||||| | ||| |||||||  |||||||||||||    
T  47194883 tcttgcctatgtgcttgagcattggaagactcttgcctatgtgcttgagca 47194833  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 193
Target Start/End: Complemental strand, 22639827 - 22639744
Alignment:
Q  109 tcttgcctatgtgcttgagcatagtaagtctcttgctaatgtgcttgagcaattgtaatcttgtatgattacagtgacaaatctc 193  Q
    |||||| | |||||||||||||   ||||||||||||  |||||||||| |||| |||||||||  ||||| ||||| |||||||    
T  22639827 tcttgcttttgtgcttgagcatttgaagtctcttgcttgtgtgcttgagtaatt-taatcttgtgcgattatagtgaaaaatctc 22639744  T

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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 120 - 209
Target Start/End: Original strand, 12183480 - 12183569
Alignment:
Q  120 tgcttgagcatagtaagtctcttgctaatgtgcttgagcaattgtaatcttgtatgattacagtgacaaatctcgcgtaagtgacaaggg 209  Q
    ||||||||||| | ||||||||||||  ||||  |||||||||||||||||||||||||| ||| | |||||||  ||||||||||||||    
T  12183480 tgcttgagcattgaaagtctcttgcttgtgtggctgagcaattgtaatcttgtatgattatagtaaaaaatctcttgtaagtgacaaggg 12183569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 209
Target Start/End: Complemental strand, 13242740 - 13242687
Alignment:
Q  156 agcaattgtaatcttgtatgattacagtgacaaatctcgcgtaagtgacaaggg 209  Q
    ||||||||||||||||| ||||||  |||| |||||||  ||||||||||||||    
T  13242740 agcaattgtaatcttgtgtgattattgtgaaaaatctcttgtaagtgacaaggg 13242687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 193
Target Start/End: Original strand, 31720232 - 31720277
Alignment:
Q  148 tgtgcttgagcaattgtaatcttgtatgattacagtgacaaatctc 193  Q
    ||||||||| ||||||||||||||| |||||| ||||| |||||||    
T  31720232 tgtgcttgaacaattgtaatcttgtgtgattatagtgaaaaatctc 31720277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 193
Target Start/End: Complemental strand, 14757891 - 14757808
Alignment:
Q  109 tcttgcctatgtgcttgagcatagtaagtctcttgctaatgtgcttgagcaattgtaatcttgtatgattacagtgacaaatctc 193  Q
    |||||| | |||||||||| ||   ||||||||||||  || ||||||||| |||||||||||| |||||| ||||| |||||||    
T  14757891 tcttgcttgtgtgcttgagtatttgaagtctcttgcttgtg-gcttgagcatttgtaatcttgtgtgattatagtgaaaaatctc 14757808  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 134 - 207
Target Start/End: Original strand, 19431878 - 19431951
Alignment:
Q  134 aagtctcttgctaatgtgcttgagcaattgtaatcttgtatgattacagtgacaaatctcgcgtaagtgacaag 207  Q
    ||||||||||||  ||| ||||||||||||||||||||| |||||| ||||| |||||||| ||||||||||||    
T  19431878 aagtctcttgcttgtgttcttgagcaattgtaatcttgtgtgattatagtgaaaaatctcgtgtaagtgacaag 19431951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 190
Target Start/End: Complemental strand, 1463872 - 1463816
Alignment:
Q  134 aagtctcttgctaatgtgcttgagcaattgtaatcttgtatgattacagtgacaaat 190  Q
    ||||||||||||  |||||||||||||||||||||||| ||||||| ||||| ||||    
T  1463872 aagtctcttgcttgtgtgcttgagcaattgtaatcttgcatgattatagtgaaaaat 1463816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 118 - 214
Target Start/End: Original strand, 7921292 - 7921387
Alignment:
Q  118 tgtgcttgagcatagtaagtctcttgctaatgtgcttgagcaattgtaatcttgtatgattacagtgacaaatctcgcgtaagtgacaagggcactg 214  Q
    ||||||||||||||  ||||||||||||  |||||||||||| || ||||| ||  |||||| ||||| |||||||  |||||||||||||| ||||    
T  7921292 tgtgcttgagcatatgaagtctcttgcttgtgtgcttgagcatttataatc-tgattgattatagtgaaaaatctcttgtaagtgacaaggggactg 7921387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 193
Target Start/End: Original strand, 17769626 - 17769685
Alignment:
Q  134 aagtctcttgctaatgtgcttgagcaattgtaatcttgtatgattacagtgacaaatctc 193  Q
    ||||||| ||||  ||||||||||||||||||||||||| |||||| ||||| |||||||    
T  17769626 aagtctcatgcttgtgtgcttgagcaattgtaatcttgtgtgattatagtgaaaaatctc 17769685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 193
Target Start/End: Original strand, 19070927 - 19070986
Alignment:
Q  134 aagtctcttgctaatgtgcttgagcaattgtaatcttgtatgattacagtgacaaatctc 193  Q
    ||||||| ||||  ||||||||||||||||||||||||| |||||| ||||| |||||||    
T  19070927 aagtctcatgcttgtgtgcttgagcaattgtaatcttgtgtgattatagtgaaaaatctc 19070986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 209
Target Start/End: Complemental strand, 19225344 - 19225269
Alignment:
Q  134 aagtctcttgctaatgtgcttgagcaattgtaatcttgtatgattacagtgacaaatctcgcgtaagtgacaaggg 209  Q
    |||| |||||||  ||||||||||||||||||||||||| ||||||  |||| |||||||  |||| |||||||||    
T  19225344 aagtttcttgcttgtgtgcttgagcaattgtaatcttgtttgattatggtgaaaaatctcttgtaaatgacaaggg 19225269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 185
Target Start/End: Complemental strand, 16093990 - 16093923
Alignment:
Q  118 tgtgcttgagcatagtaagtctcttgctaatgtgcttgagcaattgtaatcttgtatgattacagtga 185  Q
    ||||||||||||||| || ||| ||||   ||||||||||| ||||||||||||| |||||| |||||    
T  16093990 tgtgcttgagcatagaaattcttttgcatgtgtgcttgagcgattgtaatcttgtgtgattatagtga 16093923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 162
Target Start/End: Original strand, 45862180 - 45862223
Alignment:
Q  119 gtgcttgagcatagtaagtctcttgctaatgtgcttgagcaatt 162  Q
    |||||||||||||| ||||||||||||  |||||||||||||||    
T  45862180 gtgcttgagcataggaagtctcttgcttgtgtgcttgagcaatt 45862223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 162
Target Start/End: Complemental strand, 13953811 - 13953758
Alignment:
Q  109 tcttgcctatgtgcttgagcatagtaagtctcttgctaatgtgcttgagcaatt 162  Q
    |||||| | |||||||||||| || ||||||||||||  |||||||||||||||    
T  13953811 tcttgcttgtgtgcttgagcaaaggaagtctcttgcttgtgtgcttgagcaatt 13953758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 13953831 - 13953790
Alignment:
Q  119 gtgcttgagcatagtaagtctcttgctaatgtgcttgagcaa 160  Q
    |||||||||||||| ||||||||||||  |||||||||||||    
T  13953831 gtgcttgagcataggaagtctcttgcttgtgtgcttgagcaa 13953790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 109 - 193
Target Start/End: Complemental strand, 24619225 - 24619141
Alignment:
Q  109 tcttgcctatgtgcttgagcatagtaagtctcttgctaatgtgcttgagcaattgtaatcttgtatgattacagtgacaaatctc 193  Q
    |||||| | |||||||||||||   ||||||||||||  ||||||||||||||||||||||||| |||||| ||||| |||||||    
T  24619225 tcttgcttttgtgcttgagcatttaaagtctcttgcttgtgtgcttgagcaattgtaatcttgtgtgattaaagtgaaaaatctc 24619141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 206
Target Start/End: Original strand, 5902137 - 5902223
Alignment:
Q  120 tgcttgagcatagtaagtctcttgctaatgtgcttgagcaattgtaatcttgtatgattacagtgacaaatctcgcgtaagtgacaa 206  Q
    ||||||||||| | |||| |||||||  ||||||||| ||||||||||||||| | || | ||||| ||||||   |||||||||||    
T  5902137 tgcttgagcattggaagtttcttgcttgtgtgcttgaacaattgtaatcttgtgtaataatagtgaaaaatctattgtaagtgacaa 5902223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 214
Target Start/End: Complemental strand, 15193265 - 15193199
Alignment:
Q  148 tgtgcttgagcaattgtaatcttgtatgattacagtgacaaatctcgcgtaagtgacaagggcactg 214  Q
    ||||||| ||||||||||||||||| |||||| ||| | |||| ||  |||||||||||||| ||||    
T  15193265 tgtgcttaagcaattgtaatcttgtgtgattatagtaaaaaatttcttgtaagtgacaaggggactg 15193199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 10328915 - 10328971
Alignment:
Q  137 tctcttgctaatgtgcttgagcaattgtaatcttgtatgattacagtgacaaatctc 193  Q
    |||||||||  ||||||| |||| |||||||||||| |||||| ||||| |||||||    
T  10328915 tctcttgcttgtgtgctttagcatttgtaatcttgtgtgattatagtgaaaaatctc 10328971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1339 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold1339
Description:

Target: scaffold1339; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 109 - 209
Target Start/End: Complemental strand, 1805 - 1704
Alignment:
Q  109 tcttgcctatgtgcttgagcatagtaagtctcttgctaatgtgcttgagcaattgtaatcttgtatgattacagtg-acaaatctcgcgtaagtgacaag 207  Q
    |||||| | ||||||||||||||| ||||| ||||||  ||| ||| ||||||||||||||||| |||||| |||| | |||||||  ||||||||||||    
T  1805 tcttgcttttgtgcttgagcataggaagtcgcttgcttgtgttcttaagcaattgtaatcttgtgtgattatagtgaaaaaatctcttgtaagtgacaag 1706  T
Q  208 gg 209  Q
    ||    
T  1705 gg 1704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 168
Target Start/End: Complemental strand, 202 - 168
Alignment:
Q  134 aagtctcttgctaatgtgcttgagcaattgtaatc 168  Q
    ||||||||||||| |||||||||||||||||||||    
T  202 aagtctcttgctattgtgcttgagcaattgtaatc 168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0908 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0908
Description:

Target: scaffold0908; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 162
Target Start/End: Original strand, 4461 - 4514
Alignment:
Q  109 tcttgcctatgtgcttgagcatagtaagtctcttgctaatgtgcttgagcaatt 162  Q
    |||||| | |||||||||||| || ||||||||||||  |||||||||||||||    
T  4461 tcttgcttgtgtgcttgagcaaaggaagtctcttgcttgtgtgcttgagcaatt 4514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 162
Target Start/End: Original strand, 2346 - 2399
Alignment:
Q  109 tcttgcctatgtgcttgagcatagtaagtctcttgctaatgtgcttgagcaatt 162  Q
    |||||| | ||||||||||||||| |||||||||||   |||||||||||||||    
T  2346 tcttgcttgtgtgcttgagcataggaagtctcttgcctgtgtgcttgagcaatt 2399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 19 - 60
Alignment:
Q  119 gtgcttgagcatagtaagtctcttgctaatgtgcttgagcaa 160  Q
    |||||||||||||| ||||||||||||  |||||||||||||    
T  19 gtgcttgagcataggaagtctcttgcttgtgtgcttgagcaa 60  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 38627 - 38668
Alignment:
Q  119 gtgcttgagcatagtaagtctcttgctaatgtgcttgagcaa 160  Q
    |||||||||||||| ||||||||||||  |||||||||||||    
T  38627 gtgcttgagcatagaaagtctcttgcttgtgtgcttgagcaa 38668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 930 - 971
Alignment:
Q  119 gtgcttgagcatagtaagtctcttgctaatgtgcttgagcaa 160  Q
    |||||||||||||| ||||||||||||  |||||||||||||    
T  930 gtgcttgagcataggaagtctcttgcttgtgtgcttgagcaa 971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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