View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0158_high_1 (Length: 991)
Name: NF0158_high_1
Description: NF0158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0158_high_1
Alignment Details
Target: chr1 (Bit Score: 814; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 814; E-Value: 0
Query Start/End: Original strand, 23 - 908
Target Start/End: Complemental strand, 40987380 - 40986495
Alignment:
Q
23
tcatcaaaaattggattgcacaattcactggccgtcgaattaacaagttttctctcactgtttcgaaccctcaaacttgtggggaaacaatcgaacgttg
122
Q
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
T
40987380
tcatcaaaaattggattgcacaattcactagccgtcgaattaacaagttttctctcactgtttcaaaccctcaaacttgtggggaaacaatcgaacgttg
40987281
T
Q
123
tgttgctttcgtaacacaacggggtgtgaaagatttaactcttgatttctctaatcccaaatggaatgagaatgatttggatgataaacatgcgctgttc
222
Q
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
40987280
tgttgctttcgtgacacaacggggtgtgaaagatttaactcttgatttctctaatcccaaatggaatgagaatgatttggatgataaacatgcgctgttc
40987181
T
Q
223
caattgccaacacatgtttatcaactcggatcgtcgctcaaatcactaaaattgtattcatgtagttttcatatgctgaatattcttaactttggtgcac
322
Q
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||| | |||||||||||||||||||||
T
40987180
caattgccaacacatgtttatcaactcggatcgttgctcaaatcactaaaattgtattcatgcagttttgatatgccggatattcttaactttggtgcac
40987081
T
Q
323
tcaaagacgtttctttgggttggattgaagttcccatgaatactctcaaaacgttgttatcaacttgcaggactattgagaatttgagtttgaagaggtg
422
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
T
40987080
tcaaagacgtttctttgggttggattgaagttcccatgaatactctcaaaacgttgttatcaacttgcaagactattgagaatttgagtttgaagaggtg
40986981
T
Q
423
ttggaatttggtggactttgatttaaaagatattgtacaacttgggttaaaaagattggtgctaaacaagtgtgatacacggtgtatcaaattagatgca
522
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
T
40986980
ttggaatttggtggactttgatttaaaagatattgtacaacttgggttaaaaagaatggtgctaaacaagtgtgatacacagtgtatcaaattagatgca
40986881
T
Q
523
ccaaatcttaaattcttcaagtattctggggatgtgtttacttcagagatatgtgtaagtccaaatgttatagaagaggtagacattggtttttccacag
622
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
T
40986880
ccaaatcttaaattcttcaagtattctggggatgtgtttacttcagagatatgtgtaagtccaaatgttatagaataggtagacattggtttttccacag
40986781
T
Q
623
aaccaaaattctataaacttcatgccaatggactatgtcaaatactgattgatttcaaagatgctaagattctaacagtttgcagctatctactccaggt
722
Q
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
40986780
aaccaaaattttataaacttcatgccaatggactatgtcaaatactgattgatttcaaagatgctaagattctaacagtttgcagctatctactccaggt
40986681
T
Q
723
acacttttattcatttagttgacatccaatttgtgattatagattaattttacattgatatttgttattatgtttatttctaaacattttgtcttttgtt
822
Q
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
T
40986680
acaattttattcatttagttgacatccaatttgtgattatagattaattttacattgatatttgttattgtgtttatttctaaacattttgtcttttgtt
40986581
T
Q
823
atacacaaaaaggttgctccatccgcacgtgacctagtaacagtgagtacaaaaacttatttgaatgtaagacatttgattctaaa
908
Q
|| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
T
40986580
atgcacaaaaaggttgctccatccgcaggtgacctagtaacagtgagtgcaaaaacttatttgaatgtaagacatttgattctaaa
40986495
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 23 - 475
Target Start/End: Complemental strand, 31463319 - 31462867
Alignment:
Q
23
tcatcaaaaattggattgcacaattcactggccgtcgaattaacaagttttctctcactgtttcgaaccctcaaacttgtggggaaacaatcgaacgttg
122
Q
|||||| ||||||||||||||| || || ||||||| |||||||| |||||||||| ||||| |||||||||| ||||||||||||||| |||| |||
T
31463319
tcatcacaaattggattgcacacttgtctagccgtcgcattaacaaattttctctcatggtttcaaaccctcaaatttgtggggaaacaattgaacattg
31463220
T
Q
123
tgttgctttcgtaacacaacggggtgtgaaagatttaactcttgatttctctaatcccaaatggaatgagaatgatttggatgataaacatgcgctgttc
222
Q
||||||||||| | |||||| |||||||||||||||||||||||||||||| |||| |||||| | |||| ||||||||||||||||||| | ||||
T
31463219
tgttgctttcgcgatacaacgcggtgtgaaagatttaactcttgatttctctgatcctaaatgggactagaacgatttggatgataaacatgtgttgttt
31463120
T
Q
223
caattgccaacacatgtttatcaactcggatcgtcgctcaaatcactaaaattgtattcatgtagttttcatatgctgaatattcttaactttggtgcac
322
Q
|||||| ||| ||||||||||||||| || | || |||| || ||||||||||||||| |||| ||||||| || || |||||||||||||||
T
31463119
caattgtcaatgcatgtttatcaactcagactattccttgaatctctgaaattgtattcatgtgattttgatatgctagatttttttaactttggtgcac
31463020
T
Q
323
tcaaagacgtttctttgggttggattgaagttcccatgaatactctcaaaacgttgttatcaacttgcaggactattgagaatttgagtttgaagaggtg
422
Q
||||| ||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||| | ||||||||||| ||||||| | ||||||||
T
31463019
tcaaaaacgtttctttgggttggattgaagttcacatcgatactctcaaaactttgttatcaacttgtaagactattgagagtttgagtcttaagaggtg
31462920
T
Q
423
ttggaatttggtggactttgatttaaaagatattgtacaacttgggttaaaaa
475
Q
||||||||| |||||||||||||| ||||| ||||||| ||| || |||||||
T
31462919
ttggaatttagtggactttgatttgaaagaaattgtacgactgggattaaaaa
31462867
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 175; E-Value: 1e-93
Query Start/End: Original strand, 25 - 569
Target Start/End: Complemental strand, 40995192 - 40994651
Alignment:
Q
25
atcaaaaattggattgcacaattcactggccgtcgaattaacaagttttctctcactgtttcgaaccctcaaacttgtggggaaacaatcgaacgttgtg
124
Q
|||| |||||||||||| || |||||| ||| | || ||||||||||||||||| |||| |||||||||||||||||||||||||| ||| ||||||
T
40995192
atcacaaattggattgcgcagttcactagccatgacatcaacaagttttctctcacgatttcaaaccctcaaacttgtggggaaacaattgaaggttgtg
40995093
T
Q
125
ttgctttcgtaacacaacggggtgtgaaagatttaactcttgatttctctaatcccaaatggaatgagaatgatttggatgataaacatgcgctgttcca
224
Q
||||||| | ||||||| ||| |||||||||||||| ||||||||||| |||| || ||| | || || |||||||| |||||||||| |||||||
T
40995092
ttgcttttgcgacacaacagggcgtgaaagatttaacatttgatttctctgatcctaagtgggaagacaacaatttggattgtaaacatgcgttgttcca
40994993
T
Q
225
attgccaacacatgtttatcaactcggatcgtcgctcaaatcactaaaattgtattcatgtagttttcatatgctgaatattcttaactttggtgcactc
324
Q
||||||||| || ||||||||||||||||| || || ||||||| ||||||||||||||| ||||| |||||| ||| ||| |||||||| |||||||
T
40994992
attgccaacgcaggtttatcaactcggatcatcacttgaatcacttaaattgtattcatgtggttttgatatgcaaaatcttcataactttgttgcactc
40994893
T
Q
325
aaagacgtttctttgggttggattgaagttcccatgaatactctcaaaacgttgttatcaacttgcaggactattgagaatttgagtttgaagaggtgtt
424
Q
||||| | ||||||||||||||||||||| || || |||||||||| |||||||||||||| || || ||||| ||||||||| | ||| ||||
T
40994892
aaagatttgtctttgggttggattgaagttgaaatcaaaactctcaaaaaattgttatcaacttgtagaacgattgataatttgagtcttgagaaatgtt
40994793
T
Q
425
ggaatttggtggactttgatttaaaagatattgtacaacttgggttaaaaagattggtgctaaacaagtgtgatacacggtgtatcaaattagatgcacc
524
Q
|||||||| |||||||||| ||| || || |||||| |||| |||||||||| |||||||||||||| | || | ||| ||| |||||||
T
40994792
tgaatttggcaaactttgatttgggaga---tgaaccacttggattaacaagattggtggtaaacaagtgtgatgctgagtatttcatatttaatgcacc
40994696
T
Q
525
aaatcttaaattcttcaagtattctggggatgtgtttacttcaga
569
Q
||||||||||| |||||| |||||||||| |||||||||||||||
T
40994695
aaatcttaaatacttcaaatattctggggctgtgtttacttcaga
40994651
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 150; E-Value: 9e-79
Query Start/End: Original strand, 23 - 457
Target Start/End: Original strand, 31462411 - 31462847
Alignment:
Q
23
tcatcaaaaattggattgcacaattcactggccgtcgaattaacaagttttctctcactgtttcgaaccctcaaacttgtggggaaacaatcgaacgttg
122
Q
|||||| ||||||||||||||| | |||| ||||| | |||||||| |||||||||| ||| |||||||||||||||||| |||||||||||| |||
T
31462411
tcatcacaaattggattgcacactacactagccgttgcattaacaaaatttctctcacgattttgaaccctcaaacttgtggagaaacaatcgaatgttt
31462510
T
Q
123
tgttgctttcgtaacacaacggggtgtgaaagatttaactcttgatttctctaatcccaaatggaatgagaatgatttggatgataaacatgcgctgttc
222
Q
||||||||||| || ||||| ||| | || |||||||||||||||||| | |||| |||||| ||||||| |||||||||||||||||||| ||
T
31462511
tgttgctttcgcaatgcaacgaggtacgcaatatttaactcttgatttctatgatcctaaatggtatgagaacaatttggatgataaacatgcgtaattt
31462610
T
Q
223
caattgccaacacatgtttatcaactcggatcgtcgctcaaatcactaaaattgtattcatgtagttttcatatgctgaatattcttaactttggtgcac
322
Q
||||| |||||||| |||||||||| ||||| | ||| ||||||||||||||||||||||| ||||| |||| | | || ||||||||||| ||||||
T
31462611
caattttcaacacatttttatcaactaggatcattgcttgaatcactaaaattgtattcatgtggttttgatattccgcattttcttaactttagtgcac
31462710
T
Q
323
tcaaagacgtttctttg--ggttggattgaagttcccatgaatactctcaaaacgttgttatcaacttgcaggactattgagaatttgagtttgaagagg
420
Q
||||||||||||||||| |||||||||||||| ||| || ||| ||||| || |||||| ||| | |||||| |||| ||||||| | | ||||
T
31462711
tcaaagacgtttctttgatttttggattgaagttcacatcgatgctcctaaaactttattatcactttgtaagactatcgagagtttgagtctaacgagg
31462810
T
Q
421
tgttggaatttggtggactttgatttaaaagatattg
457
Q
||||| |||||||||||||||||||| |||||||||
T
31462811
tgttgaaatttggtggactttgatttggaagatattg
31462847
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 23 - 334
Target Start/End: Original strand, 31476697 - 31477009
Alignment:
Q
23
tcatcaaaaattggattgcacaattcactggccgtcgaattaacaagttttctctcactgtttcgaaccctcaaacttgtggggaaacaa-tcgaacgtt
121
Q
|||||| ||||||||||||||| ||||||||||||| ||||| || |||||||||| |||| |||| |||||||||| |||||||||| ||||| |||
T
31476697
tcatcacaaattggattgcacacttcactggccgtcacattaaaaaaatttctctcacggttttgaacactcaaacttgcggggaaacaaatcgaatgtt
31476796
T
Q
122
gtgttgctttcgtaacacaacggggtgtgaaagatttaactcttgatttctctaatcccaaatggaatgagaatgatttggatgataaacatgcgctgtt
221
Q
|||||||||||| |||||||| ||| || |||||| |||| ||||||||||| || | |||||| |||| |||||||||||||||||||||||| | ||
T
31476797
ttgttgctttcgtgacacaacgaggtatggaagattaaacttttgatttctctgattctaaatggtatgataatgatttggatgataaacatgcgttatt
31476896
T
Q
222
ccaattgccaacacatgtttatcaactcggatcgtcgctcaaatcactaaaattgtattcatgtagttttcatatgctgaatattcttaactttggtgca
321
Q
||||||| |||||||||||||| |||| ||||| | ||| ||||||| ||||||||||||||| |||| |||||| ||| |||||| |||| ||||
T
31476897
ccaattgacaacacatgtttattaactaggatcattgcttcaatcactgaaattgtattcatgtggtttggatatgccaaattttcttatctttactgca
31476996
T
Q
322
ctcaaagacgttt
334
Q
|| ||||| ||||
T
31476997
cttaaagaagttt
31477009
T
Back To:
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 23 - 373
Target Start/End: Complemental strand, 31477355 - 31477013
Alignment:
Q
23
tcatcaaaaattggattgcacaattcactggccgtcgaattaacaagttttctctcactgtttcgaaccctcaaacttgtggggaaacaatcgaacgttg
122
Q
|||||| ||||||||| ||||| |||||| || ||| |||||||| ||||| |||| ||||||||||||||||||||| ||||||||||||||||||
T
31477355
tcatcacaaattggatcgcacacttcactagctgtcatattaacaaattttccctcatggtttcgaaccctcaaacttgttgggaaacaatcgaacgtta
31477256
T
Q
123
tgttgctttcgtaacacaacggggtgtgaaagatttaactcttgatttctctaatcccaaatggaatgagaatgatttggatgataaacatgcgctgttc
222
Q
||||||||||| | |||||| |||||||||||||||||||||||||||| ||||| |||| | | ||| ||||||||| |||| |||||
T
31477255
tgttgctttcgcgatacaacgctgtgtgaaagatttaactcttgatttctcaaatcctaaataggactcgaacgatttggat--------tgcgttgttc
31477164
T
Q
223
caattgccaacacatgtttatcaactcggatcgtcgctcaaatcactaaaattgtattcatgtagttttcatatgctgaatattcttaactttggtgcac
322
Q
|||||||||| ||||||||||||||| | | ||||||||||| ||||||||| ||||| |||| |||||| || ||||||||||| ||||||
T
31477163
caattgccaatgcatgtttatcaactcaaactattcctcaaatcactgaaattgtatgcatgtgattttgatatgccagattttcttaacttttgtgcac
31477064
T
Q
323
tcaaagacgtttctttgggttggattgaagttcccatgaatactctcaaaa
373
Q
|||||||||||||||| |||||||||||||||| ||| ||||||||||||
T
31477063
tcaaagacgtttctttaggttggattgaagttcacatcgatactctcaaaa
31477013
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 685 - 731
Target Start/End: Complemental strand, 40994544 - 40994498
Alignment:
Q
685
gctaagattctaacagtttgcagctatctactccaggtacactttta
731
Q
||||||||||||||||||||||| |||||||||||||||| ||||||
T
40994544
gctaagattctaacagtttgcagttatctactccaggtactctttta
40994498
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2 (Bit Score: 159; Significance: 4e-84; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 4e-84
Query Start/End: Original strand, 61 - 569
Target Start/End: Original strand, 21179648 - 21180153
Alignment:
Q
61
attaacaagttttctctcactgtttcgaaccctcaaacttgtggggaaacaatcgaacgttgtgttgctttcgtaacacaacggggtgtgaaagatttaa
160
Q
||||||| |||||||||||| |||||||| ||||||||||||||||||||||| || ||||||||||||||| | ||||||||| |||||||| ||||
T
21179648
attaacaggttttctctcacggtttcgaatcctcaaacttgtggggaaacaattgagcgttgtgttgctttcacgatacaacggggagtgaaagagttaa
21179747
T
Q
161
ctcttgatttctctaatcccaaatggaatgagaatgatttggatgataaacatgcgctgttccaattgccaacacatgtttatcaactcggatcgtcgct
260
Q
|||||||||| | |||| |||||| | || |||||||| |||| |||||||||| |||| ||||||||||| ||||||||||||||||||| ||||||
T
21179748
ttcttgatttcccggatccaaaatgggaagataatgattttgatggtaaacatgcgttgtttcaattgccaacgcatgtttatcaactcggattgtcgct
21179847
T
Q
261
caaatcactaaaattgtattcatgtagttttcatatgctgaatattcttaactttggtgcactcaaagacgtttctttgggttggattgaagttcccatg
360
Q
||||||||||| ||||||| ||| |||| || || || |||||||||||||||||||||||||| | ||||||||||||||||||||| ||
T
21179848
tgaatcactaaaactgtattcttgtggtttcgatgcgcaagattttcttaactttggtgcactcaaagacttatctttgggttggattgaagttaaaatc
21179947
T
Q
361
aatactctcaaaacgttgttatcaacttgcaggactattgagaatttgagtttgaagaggtgttggaatttggtggactttgatttaaaagatattgtac
460
Q
|| || || |||| |||||||||| ||| ||||| ||||| | ||||| | | |||| || |||||||||| | |||||||||| ||| || ||
T
21179948
aaaaccctaaaaaaattgttatcaatttgtaggacgattgaaagtttgaatcttaagaaatgctggaatttggcgaactttgatttgggaga---tgaac
21180044
T
Q
461
aacttgggttaaaaagattggtgctaaacaagtgtgatacacggtgtatcaaattagatgcaccaaatcttaaattcttcaagtattctggggatgtgtt
560
Q
|||||| |||| |||||||||| |||||||||||||| | || | ||| ||| ||||||||||||| |||| |||||| |||||||| | ||||||
T
21180045
cacttggattaacaagattggtggtaaacaagtgtgattctgagtatttcatatttaatgcaccaaatctgaaatacttcaaatattctggagttgtgtt
21180144
T
Q
561
tacttcaga
569
Q
|||||||||
T
21180145
tacttcaga
21180153
T
Back To:
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
© Oklahoma State University
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