View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0158_high_3 (Length: 348)
Name: NF0158_high_3
Description: NF0158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0158_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 168; Significance: 5e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 82 - 253
Target Start/End: Original strand, 853510 - 853681
Alignment:
| Q |
82 |
agcacagaccaagacattaaaaagattggtgttaaccagggattcaaccaaagctctcaaaccaggagcatcaataccatcatcgtttgttatcagaatt |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
853510 |
agcacagaccaagacattaaaaagattggtgttaacgagggattcaaccaaagctctcaaaccaggagcatcaataccatcatcgtttgttatcagaatt |
853609 |
T |
|
| Q |
182 |
gttcctagcttaccctcatcatccatctccaaagttgctgtatcacttgtcatcaacacctatgcaatttta |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
853610 |
gttcctagcttaccctcatcatccatctccaaagttgctgtatcacttgtcatcaacacctatgcaatttta |
853681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 892 times since January 2019
Visitors: 2241