View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0158_low_10 (Length: 323)
Name: NF0158_low_10
Description: NF0158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0158_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 108 - 221
Target Start/End: Original strand, 8931362 - 8931475
Alignment:
| Q |
108 |
tcattcccaataccttcaacaacaccaacaccattcacaatttcttctttttcattaataccattatcaccaacataatcaaaactacttttttcaccaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8931362 |
tcattcccaataccttcaacaacaccaacaccattcacaatttcttctttttcattaataccattatcaccaacataatcaaaactacttttttcaccaa |
8931461 |
T |
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| Q |
208 |
acttatctttattt |
221 |
Q |
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||||||||| |||| |
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| T |
8931462 |
acttatcttcattt |
8931475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 252 - 323
Target Start/End: Original strand, 8931506 - 8931577
Alignment:
| Q |
252 |
aaagatgcagaattcaaacccttactatcatgatcatgaccattttcagcaccaccaacatcaaaaggtgta |
323 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8931506 |
aaagatgcagaaatcaaacccttactatcatgatcatgaccattttcagcaccaccaacatcaaaaggtgta |
8931577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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