View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0158_low_13 (Length: 288)
Name: NF0158_low_13
Description: NF0158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0158_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 30 - 280
Target Start/End: Complemental strand, 27644307 - 27644056
Alignment:
| Q |
30 |
atgtcaaactatgcctaataacgcaaacaaatcaatgtatgattgtttcttcttccaaaagcaaattagaaaaaaggggaaaggaaaagattaaataatc |
129 |
Q |
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| T |
27644307 |
atgtcaaactatgcctaataacgcaaacaaatcaatgtatgattgtttcttcttccaaaagcaaattaaaaaaaaggggaaaggaaaagattaaataatc |
27644208 |
T |
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| Q |
130 |
atgacatcctaaagattctcaagtcacagaaaactaaaaatccatgttcaatgatcaggatccttgtgcgtattatttgcacaaactaatgctcctagct |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27644207 |
atgacatcctaaagattctcaagtcacagaaaactaaaaatccatgttcaatgatcaggatccttgtgcgtattatttgcacaaactaatgctcctagct |
27644108 |
T |
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| Q |
230 |
gat-ttatgtgacaattactaaattacaagctctaaaatcttatttcatctc |
280 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27644107 |
gatcttatgtgacaattactaaattacaagctctaaaatcttatttcatctc |
27644056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 152 - 280
Target Start/End: Complemental strand, 27664924 - 27664795
Alignment:
| Q |
152 |
gtcacagaaaactaaaaatccatgttcaatgatcaggatccttgtgcgtattatttgcacaaactaatgctcctagctgat-ttatgtgacaattactaa |
250 |
Q |
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|||||| |||||||||||||||||||||||| | |||||| |||||| ||||||||||| |||||||| || |||||||| |||| ||||||||||||| |
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| T |
27664924 |
gtcacataaaactaaaaatccatgttcaatggttaggatcgttgtgcatattatttgcaaaaactaattttcatagctgatattatttgacaattactaa |
27664825 |
T |
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| Q |
251 |
attacaagctctaaaatcttatttcatctc |
280 |
Q |
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| T |
27664824 |
aatacaagctctagaatgttatttcatctc |
27664795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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