View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0158_low_14 (Length: 270)

Name: NF0158_low_14
Description: NF0158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0158_low_14
NF0158_low_14
[»] chr8 (6 HSPs)
chr8 (8-249)||(24647929-24648170)
chr8 (11-249)||(22531527-22531767)
chr8 (11-249)||(22536212-22536452)
chr8 (46-246)||(17262387-17262587)
chr8 (8-248)||(20379260-20379500)
chr8 (139-227)||(16205631-16205719)
[»] scaffold0810 (1 HSPs)
scaffold0810 (8-247)||(1476-1715)
[»] scaffold0066 (1 HSPs)
scaffold0066 (124-232)||(60797-60905)
[»] scaffold0032 (1 HSPs)
scaffold0032 (11-246)||(679-914)
[»] scaffold0004 (1 HSPs)
scaffold0004 (8-236)||(24812-25040)
[»] scaffold0379 (1 HSPs)
scaffold0379 (39-246)||(600-807)
[»] scaffold0396 (1 HSPs)
scaffold0396 (48-246)||(14737-14935)
[»] chr6 (1 HSPs)
chr6 (39-193)||(18380905-18381059)
[»] scaffold0395 (1 HSPs)
scaffold0395 (124-216)||(13460-13552)
[»] scaffold0676 (1 HSPs)
scaffold0676 (46-245)||(1075-1274)
[»] scaffold0594 (1 HSPs)
scaffold0594 (75-246)||(4632-4803)
[»] chr4 (2 HSPs)
chr4 (25-223)||(19615847-19616045)
chr4 (147-222)||(13581594-13581669)
[»] scaffold0080 (2 HSPs)
scaffold0080 (46-223)||(30418-30595)
scaffold0080 (46-223)||(35883-36060)
[»] chr5 (2 HSPs)
chr5 (57-236)||(23436144-23436323)
chr5 (57-236)||(23447511-23447690)
[»] chr7 (2 HSPs)
chr7 (55-218)||(13134884-13135047)
chr7 (147-222)||(9715327-9715402)
[»] chr3 (3 HSPs)
chr3 (57-246)||(17254535-17254724)
chr3 (39-246)||(18138456-18138661)
chr3 (124-218)||(12955575-12955669)
[»] scaffold0193 (1 HSPs)
scaffold0193 (25-215)||(5855-6045)
[»] chr1 (1 HSPs)
chr1 (45-246)||(36137026-36137227)
[»] chr2 (1 HSPs)
chr2 (141-223)||(18940880-18940962)
[»] scaffold0084 (1 HSPs)
scaffold0084 (57-157)||(40949-41049)
[»] scaffold0120 (2 HSPs)
scaffold0120 (212-249)||(33961-33998)
scaffold0120 (212-249)||(45007-45044)


Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 8 - 249
Target Start/End: Complemental strand, 24648170 - 24647929
Alignment:
Q  8 cagcacagaccttaagaagtctaatgcaatttcaaacttgatggaatactttcctccaatcttcaagcaagaccctctagaagtgcatatgaacttcatc 107  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  24648170 cagcacagacctgaagaagtctaatgcaatttcaaacttgatggaagactttcctccaatctgcaagcaagaccctctagaagtgcatatgaacttcatc 24648071  T
Q  108 aaggtatactttgctctaactggtaaaaagataaggctagaagatgttcctgagaccatgtatggtggagcattaccagtagcaaaaaggaggaagacta 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  24648070 aaggtatactttgctctaactggtaaaaagataaggctagaagatgttcctgagaccatgtatggtggagcattaccagtagtaaaaagcaggaagacta 24647971  T
Q  208 agaggaaagcaatcaccaaaaatgagtatttagatgatgatg 249  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  24647970 agaggaaagcaatcaccaaaaatgagtatctagatgatgatg 24647929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 11 - 249
Target Start/End: Original strand, 22531527 - 22531767
Alignment:
Q  11 cacagaccttaagaagtctaatgcaatttcaaacttgatggaatactttcctccaatcttcaagcaa--gaccctctagaagtgcatatgaacttcatca 108  Q
    ||||| ||| ||| ||||| ||||||||||||||||||||||| ||||||||||||||| |||||||  ||||||||| ||||||| |||||||||||||    
T  22531527 cacagtcctgaaggagtctgatgcaatttcaaacttgatggaagactttcctccaatctgcaagcaaaagaccctctaaaagtgcagatgaacttcatca 22531626  T
Q  109 aggtatactttgctctaactggtaaaaagataaggctagaagatgttcctgagaccatgtatggtggagcattaccagtagcaaaaaggaggaagactaa 208  Q
    ||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  22531627 aggaatactttgctctaactggtaaaaagataaggctagaatatgttcctcagaccatgtatggtggagcattaccagtagcaaaaagcaggaagactaa 22531726  T
Q  209 gaggaaagcaatcaccaaaaatgagtatttagatgatgatg 249  Q
    |||||||| |||||||||| |||||||| ||||||||||||    
T  22531727 gaggaaagaaatcaccaaagatgagtatctagatgatgatg 22531767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 11 - 249
Target Start/End: Original strand, 22536212 - 22536452
Alignment:
Q  11 cacagaccttaagaagtctaatgcaatttcaaacttgatggaatactttcctccaatcttcaagcaa--gaccctctagaagtgcatatgaacttcatca 108  Q
    ||||| ||| ||| ||||| ||||||||||||||||||||||| ||||||||||||||| |||||||  ||||||||| ||||||| |||||||||||||    
T  22536212 cacagtcctgaaggagtctgatgcaatttcaaacttgatggaagactttcctccaatctgcaagcaaaagaccctctaaaagtgcagatgaacttcatca 22536311  T
Q  109 aggtatactttgctctaactggtaaaaagataaggctagaagatgttcctgagaccatgtatggtggagcattaccagtagcaaaaaggaggaagactaa 208  Q
    ||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  22536312 aggaatactttgctctaactggtaaaaagataaggctagaatatgttcctcagaccatgtatggtggagcattaccagtagcaaaaagcaggaagactaa 22536411  T
Q  209 gaggaaagcaatcaccaaaaatgagtatttagatgatgatg 249  Q
    |||||||| |||||||||| |||||||| ||||||||||||    
T  22536412 gaggaaagaaatcaccaaagatgagtatctagatgatgatg 22536452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 46 - 246
Target Start/End: Complemental strand, 17262587 - 17262387
Alignment:
Q  46 tgatggaatactttcctccaatcttcaagcaagaccctctagaagtgcatatgaacttcatcaaggtatactttgctctaactggtaaaaagataaggct 145  Q
    |||||||| |||||||||| |||| ||| |||||  |||| || || || |||||||| ||||| |   |||||||| | |||||||| |||||||||||    
T  17262587 tgatggaagactttcctcctatctgcaaacaagattctcttgatgttcagatgaactttatcaaagatcactttgctgtgactggtaagaagataaggct 17262488  T
Q  146 agaagatgttcctgagaccatgtatggtggagcattaccagtagcaaaaaggaggaagactaagaggaaagcaatcaccaaaaatgagtatttagatgat 245  Q
     |||||||||||||  ||||||||||||||  |  ||||||||||||| || || ||||| |||||||||||| |||||||| | |||||||| ||||||    
T  17262487 tgaagatgttcctggaaccatgtatggtggtcccctaccagtagcaaagagcagaaagaccaagaggaaagcactcaccaaagaagagtatttggatgat 17262388  T
Q  246 g 246  Q
    |    
T  17262387 g 17262387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 8 - 248
Target Start/End: Original strand, 20379260 - 20379500
Alignment:
Q  8 cagcacagaccttaagaagtctaatgcaatttcaaacttgatggaatactttcctccaatcttcaagcaagaccctctagaagtgcatatgaacttcatc 107  Q
    |||||||||| | ||| ||||| ||||||| || |   |||||||| ||||||||||||| | ||| ||||| || || || || || |||||||||||     
T  20379260 cagcacagacttgaaggagtctgatgcaatgtccattatgatggaagactttcctccaatatgcaaacaagatcccctggatgttcagatgaacttcata 20379359  T
Q  108 aaggtatactttgctctaactggtaaaaagataaggctagaagatgttcctgagaccatgtatggtggagcattaccagtagcaaaaaggaggaagacta 207  Q
    || |   |||||||  ||||| | || ||||| || || |||||||||||||| |||||||||||||| || || |||||||||||||| | ||| || |    
T  20379360 aaagagcactttgcagtaactagcaagaagatcagacttgaagatgttcctgaaaccatgtatggtggtgctttgccagtagcaaaaagtacgaaaacaa 20379459  T
Q  208 agaggaaagcaatcaccaaaaatgagtatttagatgatgat 248  Q
    ||||||||||| |||| ||  |||||||||| | |||||||    
T  20379460 agaggaaagcactcacaaaggatgagtatttgggtgatgat 20379500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 139 - 227
Target Start/End: Complemental strand, 16205719 - 16205631
Alignment:
Q  139 taaggctagaagatgttcctgagaccatgtatggtggagcattaccagtagcaaaaaggaggaagactaagaggaaagcaatcaccaaa 227  Q
    ||||||| |||||||||| |||||  |||||||||||||| |||| ||| || || || ||||||||||||||||| ||||||||||||    
T  16205719 taaggctggaagatgttcttgagaatatgtatggtggagccttactagtggccaagagcaggaagactaagaggaaggcaatcaccaaa 16205631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0810 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0810
Description:

Target: scaffold0810; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 8 - 247
Target Start/End: Original strand, 1476 - 1715
Alignment:
Q  8 cagcacagaccttaagaagtctaatgcaatttcaaacttgatggaatactttcctccaatcttcaagcaagaccctctagaagtgcatatgaacttcatc 107  Q
    |||| ||||||| ||| ||||| ||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||| |||||||| |||||||| |||    
T  1476 cagcgcagacctgaaggagtctgatgcaatttcaaatttgatggaagactttcctccaatctgcaagcaagaccctctggaagtgcagatgaactttatc 1575  T
Q  108 aaggtatactttgctctaactggtaaaaagataaggctagaagatgttcctgagaccatgtatggtggagcattaccagtagcaaaaaggaggaagacta 207  Q
    |||  | ||||| |    ||||||| |||||||||||| ||||||||| |||||||||||||||||||| | |||  |||||||||||| |  ||||| |    
T  1576 aagcaacactttccaacgactggtacaaagataaggctggaagatgtttctgagaccatgtatggtggaaccttagaagtagcaaaaagcaaaaagacca 1675  T
Q  208 agaggaaagcaatcaccaaaaatgagtatttagatgatga 247  Q
    ||||||||||||| |  ||| |||| ||| ||||||||||    
T  1676 agaggaaagcaattataaaagatgaatatctagatgatga 1715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 124 - 232
Target Start/End: Original strand, 60797 - 60905
Alignment:
Q  124 taactggtaaaaagataaggctagaagatgttcctgagaccatgtatggtggagcattaccagtagcaaaaaggaggaagactaagaggaaagcaatcac 223  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  60797 taactggtaaaaagataaggctagatgatgttcctgagatcatgtatggtagagcattaccagtagtaaaaagcaggaagactaagaggaaagcaatcac 60896  T
Q  224 caaaaatga 232  Q
    |||| ||||    
T  60897 caaagatga 60905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 679 - 914
Alignment:
Q  11 cacagaccttaagaagtctaatgcaatttcaaacttgatggaatactttcctccaatcttcaagcaagaccctctagaagtgcatatgaacttcatcaag 110  Q
    ||||||| | ||| |||| |||||| | || ||| |||||||  ||||||||||||||| ||||||||||||  | ||||| || ||||||||||||||     
T  679 cacagacttgaaggagtccaatgcattgtccaacctgatggatgactttcctccaatctgcaagcaagaccccttggaagttcagatgaacttcatcaaa 778  T
Q  111 gtatactttgctctaactggtaaaaagataaggctagaagatgttcctgagaccatgtatggtggagcattaccagtagcaaaaaggaggaagactaaga 210  Q
    | | |||||||  ||||| |||  |||||||||||||||||||||| ||||||||||||||||||||| || ||| ||||||| || ||||| || ||||    
T  779 gaacactttgcgttaacttgtacgaagataaggctagaagatgttcttgagaccatgtatggtggagccttgccattagcaaagagcaggaaaacaaaga 878  T
Q  211 ggaaagcaatcaccaaaaatgagtatttagatgatg 246  Q
    |||||||| ||||| |  |||||||| | |||||||    
T  879 ggaaagcactcaccgaggatgagtatcttgatgatg 914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 8 - 236
Target Start/End: Original strand, 24812 - 25040
Alignment:
Q  8 cagcacagaccttaagaagtctaatgcaatttcaaacttgatggaatactttcctccaatcttcaagcaagaccctctagaagtgcatatgaacttcatc 107  Q
    |||||||||| | ||| ||||| ||||||| || ||  | ||| || |||| |||||||||| ||||||||||||  ||||||| || || |||||||||    
T  24812 cagcacagacttgaaggagtctgatgcaatgtccaatctaatgaaagacttacctccaatctgcaagcaagaccccttagaagttcagataaacttcatc 24911  T
Q  108 aaggtatactttgctctaactggtaaaaagataaggctagaagatgttcctgagaccatgtatggtggagcattaccagtagcaaaaaggaggaagacta 207  Q
    || | | |||||||  ||||| |||  ||||||||||| |||||||||||| ||||||||||||||||||| || ||||||||||| || ||||| || |    
T  24912 aaagaacactttgcattaacttgtacgaagataaggctggaagatgttcctaagaccatgtatggtggagccttgccagtagcaaagagcaggaaaacaa 25011  T
Q  208 agaggaaagcaatcaccaaaaatgagtat 236  Q
    ||||||||||| |||||||  ||||||||    
T  25012 agaggaaagcactcaccaacgatgagtat 25040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0379 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0379
Description:

Target: scaffold0379; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 39 - 246
Target Start/End: Complemental strand, 807 - 600
Alignment:
Q  39 tcaaacttgatggaatactttcctccaatcttcaagcaagaccctctagaagtgcatatgaacttcatcaaggtatactttgctctaactggtaaaaaga 138  Q
    ||||||||||||||| ||||||||||||||| ||||||| |||| ||  |||| || || ||||| ||||||  | |||||||  | ||||||| |||||    
T  807 tcaaacttgatggaagactttcctccaatctgcaagcaaaaccccctgaaagttcagataaactttatcaagcaacactttgcaatgactggtacaaaga 708  T
Q  139 taaggctagaagatgttcctgagaccatgtatggtggagcattaccagtagcaaaaaggaggaagactaagaggaaagcaatcaccaaaaatgagtattt 238  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||  |||||||| || |||||  | || ||||||||| || | ||| |||| |||||    
T  707 taaggctggaagatgttcctgagaccatgtatggtggagccttacatgtagcaaagagcaggaaatcaaataggaaagcactctctaaagatgactattt 608  T
Q  239 agatgatg 246  Q
    ||||||||    
T  607 agatgatg 600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0396 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0396
Description:

Target: scaffold0396; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 48 - 246
Target Start/End: Original strand, 14737 - 14935
Alignment:
Q  48 atggaatactttcctccaatcttcaagcaagaccctctagaagtgcatatgaacttcatcaaggtatactttgctctaactggtaaaaagataaggctag 147  Q
    |||||| |||||||| |||| | |||||||||| | || ||||| || |||||||||||||| | | |||||||  ||||||| |  ||||||||||| |    
T  14737 atggaagactttccttcaatatgcaagcaagactccctggaagttcagatgaacttcatcaaagaacactttgcattaactggcacgaagataaggctgg 14836  T
Q  148 aagatgttcctgagaccatgtatggtggagcattaccagtagcaaaaaggaggaagactaagaggaaagcaatcaccaaaaatgagtatttagatgatg 246  Q
    ||||||||||||||||||||||||||||||| || ||||||||||| || |||||  | |||||||||||| |||| ||| |||| ||||| |||||||    
T  14837 aagatgttcctgagaccatgtatggtggagccttgccagtagcaaagagcaggaaatcaaagaggaaagcactcacaaaagatgaatatttggatgatg 14935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 39 - 193
Target Start/End: Complemental strand, 18381059 - 18380905
Alignment:
Q  39 tcaaacttgatggaatactttcctccaatcttcaagcaagaccctctagaagtgcatatgaacttcatcaaggtatactttgctctaactggtaaaaaga 138  Q
    ||||||||||||||| ||||||||||||| |||||||| |||||||||||||| ||||||||||| ||||||  | | |||||  | ||| ||| |||||    
T  18381059 tcaaacttgatggaagactttcctccaatattcaagcaggaccctctagaagttcatatgaactttatcaagcaacagtttgcaatgactagtacaaaga 18380960  T
Q  139 taaggctagaagatgttcctgagaccatgtatggtggagcattaccagtagcaaa 193  Q
    ||||||| |||||| ||||| |||||||||| |||||||| ||||||||||||||    
T  18380959 taaggctggaagatattcctaagaccatgtacggtggagccttaccagtagcaaa 18380905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0395 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0395
Description:

Target: scaffold0395; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 124 - 216
Target Start/End: Original strand, 13460 - 13552
Alignment:
Q  124 taactggtaaaaagataaggctagaagatgttcctgagaccatgtatggtggagcattaccagtagcaaaaaggaggaagactaagaggaaag 216  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||    
T  13460 taactagtaaaaagataaggctagaagatgttcctaagaccatgtatggtagagcattacaagtagcaaaaagtaggaagactaagaggaaag 13552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0676 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0676
Description:

Target: scaffold0676; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 46 - 245
Target Start/End: Complemental strand, 1274 - 1075
Alignment:
Q  46 tgatggaatactttcctccaatcttcaagcaagaccctctagaagtgcatatgaacttcatcaaggtatactttgctctaactggtaaaaagataaggct 145  Q
    |||||||| |||||| |||||||| |||||||||| | || ||||| || |||||||||||||| | | |||||||  ||| |||||  |||||||||||    
T  1274 tgatggaagactttcgtccaatctgcaagcaagactccctcgaagttcagatgaacttcatcaaagaacactttgcattaagtggtacgaagataaggct 1175  T
Q  146 agaagatgttcctgagaccatgtatggtggagcattaccagtagcaaaaaggaggaagactaagaggaaagcaatcaccaaaaatgagtatttagatgat 245  Q
     ||||||||||||||||||||||||||||| || || ||| || |||| || ||||| || ||||||| |||| |||| ||  | |||||||| ||||||    
T  1174 ggaagatgttcctgagaccatgtatggtggggccttgccactatcaaagagcaggaaaacaaagaggatagcactcacaaaggaagagtatttggatgat 1075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0594
Description:

Target: scaffold0594; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 75 - 246
Target Start/End: Original strand, 4632 - 4803
Alignment:
Q  75 caagaccctctagaagtgcatatgaacttcatcaaggtatactttgctctaactggtaaaaagataaggctagaagatgttcctgagaccatgtatggtg 174  Q
    |||||||| ||  |||| || |||||||||||||  | | |||||||  |||||||||  ||||||||| | ||||||||||||||||||||||||||||    
T  4632 caagaccccctgaaagttcaaatgaacttcatcagagaacactttgcaataactggtactaagataaggttggaagatgttcctgagaccatgtatggtg 4731  T
Q  175 gagcattaccagtagcaaaaaggaggaagactaagaggaaagcaatcaccaaaaatgagtatttagatgatg 246  Q
    |||| || ||||||||||| || ||||| || |||||||||||| |||||||| | |||||| | |||||||    
T  4732 gagccttgccagtagcaaagagtaggaaaacaaagaggaaagcactcaccaaagaagagtatctggatgatg 4803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 25 - 223
Target Start/End: Original strand, 19615847 - 19616045
Alignment:
Q  25 agtctaatgcaatttcaaacttgatggaatactttcctccaatcttcaagcaagaccctctagaagtgcatatgaacttcatcaaggtatactttgctct 124  Q
    ||||||||||||| || |   |||||||| ||||||||||||||| ||| ||||| || || || || || ||||||||||| || |   |||||||       
T  19615847 agtctaatgcaatgtccattctgatggaagactttcctccaatctgcaaacaagatcccctggatgttcagatgaacttcataaaagaccactttgcaac 19615946  T
Q  125 aactggtaaaaagataaggctagaagatgttcctgagaccatgtatggtggagcattaccagtagcaaaaaggaggaagactaagaggaaagcaatcac 223  Q
    ||||||||| ||||| ||||| |||||||||||||| ||||| |||||||| || || |||||||||||||| |||||||| |||||||||||| ||||    
T  19615947 aactggtaagaagatcaggcttgaagatgttcctgaaaccatatatggtggtgctttgccagtagcaaaaagcaggaagacaaagaggaaagcactcac 19616045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 13581594 - 13581669
Alignment:
Q  147 gaagatgttcctgagaccatgtatggtggagcattaccagtagcaaaaaggaggaagactaagaggaaagcaatca 222  Q
    |||||||| ||||| || |||||||||||||   | ||||| ||||| || |||||||||||||||||||| ||||    
T  13581594 gaagatgtgcctgaaactatgtatggtggagttcttccagttgcaaagagcaggaagactaagaggaaagctatca 13581669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 46 - 223
Target Start/End: Complemental strand, 30595 - 30418
Alignment:
Q  46 tgatggaatactttcctccaatcttcaagcaagaccctctagaagtgcatatgaacttcatcaaggtatactttgctctaactggtaaaaagataaggct 145  Q
    |||||||| ||||||||||||| | ||| |||||| | || ||||| || |||||||| |||||   | |||||||  | ||||||| ||||||||||||    
T  30595 tgatggaagactttcctccaatatgcaatcaagactccctggaagttcagatgaactttatcaaacaacactttgcaatgactggtacaaagataaggct 30496  T
Q  146 agaagatgttcctgagaccatgtatggtggagcattaccagtagcaaaaaggaggaagactaagaggaaagcaatcac 223  Q
     |||||||||||||||||||||||||||||||| ||  |||||||||| || |||||  | |||||||||||| ||||    
T  30495 ggaagatgttcctgagaccatgtatggtggagccttggcagtagcaaagagtaggaaatcaaagaggaaagcactcac 30418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 46 - 223
Target Start/End: Complemental strand, 36060 - 35883
Alignment:
Q  46 tgatggaatactttcctccaatcttcaagcaagaccctctagaagtgcatatgaacttcatcaaggtatactttgctctaactggtaaaaagataaggct 145  Q
    |||||||| ||||||||||||| | ||| |||||| | || ||||| || |||||||| |||||   | |||||||  | ||||||| ||||||||||||    
T  36060 tgatggaagactttcctccaatatgcaatcaagactccctggaagttcagatgaactttatcaaacaacactttgcaatgactggtacaaagataaggct 35961  T
Q  146 agaagatgttcctgagaccatgtatggtggagcattaccagtagcaaaaaggaggaagactaagaggaaagcaatcac 223  Q
     |||||||||||||||||||||||||||||||| ||  |||||||||| || |||||  | |||||||||||| ||||    
T  35960 ggaagatgttcctgagaccatgtatggtggagccttggcagtagcaaagagtaggaaatcaaagaggaaagcactcac 35883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 57 - 236
Target Start/End: Original strand, 23436144 - 23436323
Alignment:
Q  57 tttcctccaatcttcaagcaagaccctctagaagtgcatatgaacttcatcaaggtatactttgctctaactggtaaaaagataaggctagaagatgttc 156  Q
    ||||||||||||| ||| ||||| ||||| || || |||||||||| |||||| |   |||||||   ||||||||| ||||||||||| ||||||||||    
T  23436144 tttcctccaatctgcaaacaagatcctcttgatgttcatatgaactacatcaaagatcactttgcaacaactggtaagaagataaggcttgaagatgttc 23436243  T
Q  157 ctgagaccatgtatggtggagcattaccagtagcaaaaaggaggaagactaagaggaaagcaatcaccaaaaatgagtat 236  Q
    |||| | |||||||||||| || || ||| ||||||| || || ||||| || ||||||||| |||||||| | ||||||    
T  23436244 ctgaaaacatgtatggtggtgccttgccaatagcaaagagcagaaagaccaaaaggaaagcactcaccaaagaagagtat 23436323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 57 - 236
Target Start/End: Original strand, 23447511 - 23447690
Alignment:
Q  57 tttcctccaatcttcaagcaagaccctctagaagtgcatatgaacttcatcaaggtatactttgctctaactggtaaaaagataaggctagaagatgttc 156  Q
    ||||||||||||| ||| ||||| ||||| || || |||||||||| |||||| |   |||||||   ||||||||| ||||||||||| ||||||||||    
T  23447511 tttcctccaatctgcaaacaagatcctcttgatgttcatatgaactacatcaaagatcactttgcaacaactggtaagaagataaggcttgaagatgttc 23447610  T
Q  157 ctgagaccatgtatggtggagcattaccagtagcaaaaaggaggaagactaagaggaaagcaatcaccaaaaatgagtat 236  Q
    |||| | |||||||||||| || || ||| ||||||| || || ||||| || ||||||||| |||||||| | ||||||    
T  23447611 ctgaaaacatgtatggtggtgccttgccaatagcaaagagcagaaagaccaaaaggaaagcactcaccaaagaagagtat 23447690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 55 - 218
Target Start/End: Original strand, 13134884 - 13135047
Alignment:
Q  55 actttcctccaatcttcaagcaagaccctctagaagtgcatatgaacttcatcaaggtatactttgctctaactggtaaaaagataaggctagaagatgt 154  Q
    ||||||||||||| | |||||||||||| || ||||| || || ||||| ||||||  | ||||||   | ||||||| || |||||| || ||||||||    
T  13134884 actttcctccaatatgcaagcaagaccccctggaagttcaaataaactttatcaagcaacactttgtaatgactggtacaaggataagactggaagatgt 13134983  T
Q  155 tcctgagaccatgtatggtggagcattaccagtagcaaaaaggaggaagactaagaggaaagca 218  Q
    ||| |||||||||||||||||||| || ||||||||||| || |||||  | ||||||||||||    
T  13134984 tcccgagaccatgtatggtggagccttgccagtagcaaagagcaggaaatcaaagaggaaagca 13135047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 9715327 - 9715402
Alignment:
Q  147 gaagatgttcctgagaccatgtatggtggagcattaccagtagcaaaaaggaggaagactaagaggaaagcaatca 222  Q
    |||||||| ||||| || |||||||||||||   | ||||| ||||| || |||||||||||||||||||| ||||    
T  9715327 gaagatgtgcctgaaactatgtatggtggagttcttccagttgcaaagagcaggaagactaagaggaaagctatca 9715402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 57 - 246
Target Start/End: Original strand, 17254535 - 17254724
Alignment:
Q  57 tttcctccaatcttcaagcaagaccctctagaagtgcatatgaacttcatcaaggtatactttgctctaactggtaaaaagataaggctagaagatgttc 156  Q
    ||||||||||||| ||| ||||| ||||| || || || ||||||||||| || |   |||||||  ||||| |||| ||||| ||||| ||||||||||    
T  17254535 tttcctccaatctgcaaacaagatcctcttgatgttcagatgaacttcattaaagatcactttgcagtaactagtaagaagattaggcttgaagatgttc 17254634  T
Q  157 ctgagaccatgtatggtggagcattaccagtagcaaaaaggaggaagactaagaggaaagcaatcaccaaaaatgagtatttagatgatg 246  Q
     ||| |||||||||||||| || || ||||||||||| || || ||||  |||||||||||| |||| |||  ||||||| ||| |||||    
T  17254635 ttgaaaccatgtatggtggtgccttgccagtagcaaagagcagaaagatcaagaggaaagcactcacaaaaggtgagtatctaggtgatg 17254724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 246
Target Start/End: Original strand, 18138456 - 18138661
Alignment:
Q  39 tcaaacttgatggaatactttcctccaatcttcaagcaagaccctctagaagtgcatatgaacttcatcaaggtatactttgctctaactggtaaaaaga 138  Q
    ||||||||||||||| |||||||||| |||| ||||||||| ||||| || || || ||||||| |||||  |   |||||||   ||| || |  ||||    
T  18138456 tcaaacttgatggaagactttcctcccatctgcaagcaagatcctcttgatgtccagatgaactacatcatagatcactttgcatcaacaggcacgaaga 18138555  T
Q  139 taaggctagaagatgttcctgagaccatgtatggtggagcattaccagtagcaaaaaggaggaagactaagaggaaagcaatcaccaaaaatgagtattt 238  Q
     ||  || |||||||| |||||||||||||||||||||||  ||||||| || || || ||||| ||||  |||||||| |||| |||| |||| || ||    
T  18138556 caaatctggaagatgtgcctgagaccatgtatggtggagctctaccagtggctaagagcaggaaaacta--aggaaagctatcagcaaagatgactactt 18138653  T
Q  239 agatgatg 246  Q
    ||| ||||    
T  18138654 agacgatg 18138661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 218
Target Start/End: Original strand, 12955575 - 12955669
Alignment:
Q  124 taactggtaaaaagataaggctagaagatgttcctgagaccatgtatggtggagcattaccagtagcaaaaaggaggaagactaagaggaaagca 218  Q
    |||||||||| ||||| ||||| ||| |||||| ||| || ||||||  ||| || |||||||||| |||| | |||||||| ||||||||||||    
T  12955575 taactggtaagaagattaggctggaatatgttcttgaaactatgtattatggtgccttaccagtagaaaaaggtaggaagacaaagaggaaagca 12955669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 25 - 215
Target Start/End: Complemental strand, 6045 - 5855
Alignment:
Q  25 agtctaatgcaatttcaaacttgatggaatactttcctccaatcttcaagcaagaccctctagaagtgcatatgaacttcatcaaggtatactttgctct 124  Q
    ||||| ||||||| || | | |||||||| | |||||||| |||| ||||||||| ||||| || || || || ||||||||||| |   |||||||       
T  6045 agtctgatgcaatgtccatcctgatggaagagtttcctcctatctgcaagcaagatcctcttgatgttcaaattaacttcatcaaagatcactttgcaac 5946  T
Q  125 aactggtaaaaagataaggctagaagatgttcctgagaccatgtatggtggagcattaccagtagcaaaaaggaggaagactaagaggaaa 215  Q
    | ||||||  ||||||||||| ||| |||||||||||||| ||||||||||||| || | |||| |||| ||||| ||||| |||||||||    
T  5945 acctggtacgaagataaggctggaatatgttcctgagaccgtgtatggtggagccttgctagtatcaaataggagaaagaccaagaggaaa 5855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 45 - 246
Target Start/End: Complemental strand, 36137227 - 36137026
Alignment:
Q  45 ttgatggaatactttcctccaatcttcaagcaagaccctctagaagtgcatatgaacttcatcaaggtatactttgctctaactggtaaaaagataaggc 144  Q
    |||||| || ||||||||||||| | |||||| || ||||| || || || |||||||| ||||| |   | |||||   |||||| | |||| ||||||    
T  36137227 ttgatgaaaaactttcctccaatatgcaagcaggatcctcttgatgttcagatgaactttatcaaagatcattttgcaacaactggcataaagttaaggc 36137128  T
Q  145 tagaagatgttcctgagaccatgtatggtggagcattaccagtagcaaaaaggaggaagactaagaggaaagcaatcaccaaaaatgagtatttagatga 244  Q
    | |||||||||||||| || |||||||| |||||||| |||||||| ||  | |||||||| ||||| |||||| |||||||  |||||||| | |||||    
T  36137127 ttgaagatgttcctgaaacaatgtatggaggagcattgccagtagccaagtgcaggaagaccaagagaaaagcactcaccaatgatgagtatctggatga 36137028  T
Q  245 tg 246  Q
    ||    
T  36137027 tg 36137026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 223
Target Start/End: Complemental strand, 18940962 - 18940880
Alignment:
Q  141 aggctagaagatgttcctgagaccatgtatggtggagcattaccagtagcaaaaaggaggaagactaagaggaaagcaatcac 223  Q
    ||||| |||||||||||||||| ||||||||| ||||| || ||||||||||| || |||||| | || || |||||||||||    
T  18940962 aggcttgaagatgttcctgagaacatgtatggaggagctttgccagtagcaaagagcaggaagtcaaaaagaaaagcaatcac 18940880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 157
Target Start/End: Complemental strand, 41049 - 40949
Alignment:
Q  57 tttcctccaatcttcaagcaagaccctctagaagtgcatatgaacttcatcaaggtatactttgctctaactggtaaaaagataaggctagaagatgttc 156  Q
    ||||||||||||| ||| ||||| ||||| || ||||||||||||||||||||||   |||||||   |||| |||  |||||||||||  |||||||||    
T  41049 tttcctccaatctgcaaacaagatcctcttgatgtgcatatgaacttcatcaaggatcactttgcaacaactagtacgaagataaggctgaaagatgttc 40950  T
Q  157 c 157  Q
    |    
T  40949 c 40949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 249
Target Start/End: Original strand, 33961 - 33998
Alignment:
Q  212 gaaagcaatcaccaaaaatgagtatttagatgatgatg 249  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  33961 gaaagcaatcaccaaagatgagtatctagatgatgatg 33998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 249
Target Start/End: Complemental strand, 45044 - 45007
Alignment:
Q  212 gaaagcaatcaccaaaaatgagtatttagatgatgatg 249  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  45044 gaaagcaatcaccaaagatgagtatctagatgatgatg 45007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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