View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0158_low_15 (Length: 267)
Name: NF0158_low_15
Description: NF0158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0158_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 21872540 - 21872504
Alignment:
| Q |
134 |
accacacaaaccaatccactaaaagcccgggtcaatg |
170 |
Q |
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| T |
21872540 |
accacacaaaccaatccactaaaaacccgggtcaatg |
21872504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 241
Target Start/End: Complemental strand, 21872461 - 21872433
Alignment:
| Q |
213 |
tctgaaccaccttcctcttcttcttcatc |
241 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
21872461 |
tctgaaccaccttcctcttcttcttcatc |
21872433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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