View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0158_low_20 (Length: 224)
Name: NF0158_low_20
Description: NF0158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0158_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 15 - 214
Target Start/End: Original strand, 38313409 - 38313608
Alignment:
| Q |
15 |
cagagagagcattttgtttgtaaggcattccaagagtagatggaaattttttaaggagtgcgttgaaaaggttggtggtgttgatagttcggttcgcttg |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38313409 |
cagagagagcattttgtttgtaaggcattccaagagtagatggaaattttttaaggagtgcgttgaaaaggttggtggtgttgatagttcggttcgcttg |
38313508 |
T |
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| Q |
115 |
catctagatatgtctatgagagtgaactcaacttatttgatgcttcaaagtgctcttaaatatcagcgtgcgtttgaaagtcttcacttgtatgatgatg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38313509 |
catctagatatgtctatgagagtgaactcaacttatttgatgcttcaaagtgctcttaaatatcagcgtgcgtttgaaagtcttcacttgtatgatgatg |
38313608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 64 - 214
Target Start/End: Original strand, 38308864 - 38309014
Alignment:
| Q |
64 |
tttaaggagtgcgttgaaaaggttggtggtgttgatagttcggttcgcttgcatctagatatgtctatgagagtgaactcaacttatttgatgcttcaaa |
163 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
38308864 |
tttaaggagtgcattgaaaaggttggtggtgttgatagttctgttcgtttgcatctagacatgtctatgagagtgaactcaacttatttgatgcttcaaa |
38308963 |
T |
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| Q |
164 |
gtgctcttaaatatcagcgtgcgtttgaaagtcttcacttgtatgatgatg |
214 |
Q |
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| T |
38308964 |
gtgctcttaaatatcagcttgcatttgaaagtcttcacttgtatgacgatg |
38309014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 64 - 213
Target Start/End: Original strand, 38320962 - 38321111
Alignment:
| Q |
64 |
tttaaggagtgcgttgaaaaggttggtggtgttgatagttcggttcgcttgcatctagatatgtctatgagagtgaactcaacttatttgatgcttcaaa |
163 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||| |||||||||||||||||||||||| ||| |
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| T |
38320962 |
tttaaggagtgcgttgaaaaggttggtggtgttgatagttcagttcgcttgcatctggacatgtctatgactgtgaactcaacttatttgatgcttgaaa |
38321061 |
T |
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| Q |
164 |
gtgctcttaaatatcagcgtgcgtttgaaagtcttcacttgtatgatgat |
213 |
Q |
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|||||||||||||| | ||| |||||||||||||||||||||||||||| |
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| T |
38321062 |
gtgctcttaaatataggtgtgtgtttgaaagtcttcacttgtatgatgat |
38321111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 38306088 - 38306283
Alignment:
| Q |
16 |
agagagagcattttgtttgtaaggcattccaagagtagatggaaattttttaaggagtgcgttgaaaaggttggtggtgttgatagttcggttcgcttgc |
115 |
Q |
| |
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||||||||||| |||||||| ||| |||| ||||||||| ||||| |||||||||||||||||||||||||||||| |||| ||||| |||||||||| |
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| T |
38306088 |
agagagagcatcttgtttgtgagggattcaaagagtagaaggaaaaaatttaaggagtgcgttgaaaaggttggtggtattgacagttcagttcgcttgc |
38306187 |
T |
|
| Q |
116 |
atctagatatgtctatgagagtgaactcaacttatttgatgcttcaaagtgctcttaaatatcagcgtgcgtttgaaagtcttcacttgtatgatg |
211 |
Q |
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|| | || |||||||||| ||||||||||||||||||||||| | ||||||||||||||||| | || |||||||||| ||||||||||||||| |
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| T |
38306188 |
atatggacatgtctatgactgtgaactcaacttatttgatgctcgatagtgctcttaaatatcaacatgtgtttgaaagttttcacttgtatgatg |
38306283 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 38325664 - 38325857
Alignment:
| Q |
16 |
agagagagcattttgtttgtaaggcattccaagagtagatggaaattttttaaggagtgcgttgaaaaggttggtggtgttgatagttcggttcgcttgc |
115 |
Q |
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||||||||||| ||||||| |||||||| ||||||||| || | |||||||| ||| ||||||||||||||||||| |||||||| |||||||||| |
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| T |
38325664 |
agagagagcatcatgtttgtgaggcattcaaagagtagaagggagaaatttaaggaatgcattgaaaaggttggtggtgtcgatagttccgttcgcttgc |
38325763 |
T |
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| Q |
116 |
atctagatatgtctatgagagtgaactcaacttatttgatgcttcaaagtgctcttaaatatcagcgtgcgtttgaaagtcttcacttgtatga |
209 |
Q |
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||| || ||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
38325764 |
atcaggactcgtctatgagtctgaactcaacttatttgatgcttgaaagtgctcttaaatatcggcgtgtgtttgaaagtcttcacttgtatga |
38325857 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 213
Target Start/End: Original strand, 38300169 - 38300366
Alignment:
| Q |
16 |
agagagagcattttgtttgtaaggcattccaagagtagatggaaattttttaaggagtgcgttgaaaaggttggtggtgttgatagttcggttcgcttgc |
115 |
Q |
| |
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||||| ||||| ||||||| |||||||| |||||| || || || ||||||||||| ||| ||||||||||||||||||| |||| |||||||||| |
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| T |
38300169 |
agagatagcatcatgtttgtgaggcattcaaagagtggaagggaaaaatttaaggagtgtattgcaaaggttggtggtgttgattgttccgttcgcttgc |
38300268 |
T |
|
| Q |
116 |
atctagatatgtctatgagagtgaactcaacttatttgatgcttcaaagtgctcttaaatatcagcgtgcgtttgaaagtcttcacttgtatgatgat |
213 |
Q |
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|
|||| || | | ||| ||||||||||||||||||| |||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
38300269 |
atctggacacgcctaaaagagtgaactcaacttattcaatgcttgaaagtgctcttaaatatcggcgtgtgtttgaaagtcttcacttgtatgatgat |
38300366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 64 - 213
Target Start/End: Original strand, 38316867 - 38317016
Alignment:
| Q |
64 |
tttaaggagtgcgttgaaaaggttggtggtgttgatagttcggttcgcttgcatctagatatgtctatgagagtgaactcaacttatttgatgcttcaaa |
163 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| ||| || ||||||| || ||||||||||| |||||||||||||| |||||||| ||| |
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| T |
38316867 |
tttaaggagtgcattgaaaaggttggtggtgttgatagttctgtttgcctgcatctggacatgtctatgagtctgaactcaacttatgtgatgcttgaaa |
38316966 |
T |
|
| Q |
164 |
gtgctcttaaatatcagcgtgcgtttgaaagtcttcacttgtatgatgat |
213 |
Q |
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||||||||||||||| || || ||||||||| ||||||||||||||||| |
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| T |
38316967 |
gtgctcttaaatatcggcatgtatttgaaagttttcacttgtatgatgat |
38317016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 15 - 213
Target Start/End: Complemental strand, 38850527 - 38850329
Alignment:
| Q |
15 |
cagagagagcattttgtttgtaaggcattccaagagtagatggaaattttttaaggagtgcgttgaaaaggttggtggtgttgatagttcggttcgcttg |
114 |
Q |
| |
|
||||||||| || ||||||| |||||||| |||||||| || || |||||||||||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
38850527 |
cagagagagtatcatgtttgtgaggcattcaaagagtaggagggaaaaatttaaggagtgctttgaaaaggttggtggtgttgatagttcggttcactta |
38850428 |
T |
|
| Q |
115 |
catctagatatgtctatgagagtgaactcaacttatttgatgcttcaaagtgctcttaaatatcagcgtgcgtttgaaagtcttcacttgtatgatgat |
213 |
Q |
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| T |
38850427 |
catttggatatatctatgagtttgagttcaacttatatgttgcttgaaagagctcttaaataccggtgtgcgtttgaaagttttcacttgtatgatgat |
38850329 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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