View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0158_low_21 (Length: 216)
Name: NF0158_low_21
Description: NF0158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0158_low_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 39783011 - 39782889
Alignment:
| Q |
1 |
gacgagactgaaattgagctgacattaggcccgtcgagttataaccgtagcaagaaaattgaaacaccactaacttcagaatcaggacatagtttgtctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39783011 |
gacgagactgaaattgagctgacattaggcccgtcgagttataaccgtagcaagaaaattgaaacaccactaacttcagaatcaggacatagtttgtctt |
39782912 |
T |
|
| Q |
101 |
catcttcaactggatcaagtgat |
123 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
39782911 |
catcttcaactggatcaagtgat |
39782889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1150 times since January 2019
Visitors: 2244