View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0159_low_1 (Length: 307)
Name: NF0159_low_1
Description: NF0159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0159_low_1 |
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| [»] scaffold0405 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 9695561 - 9695388
Alignment:
| Q |
1 |
gccttatcctaaaatacacaaatcacaaaaacgactttaaaatcaaaactaagagaattagattaatttccttcggtgaaacagaagcaaaattctcaca |
100 |
Q |
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| T |
9695561 |
gccttatcctaaaatacacaaatcacaaaaacgactttaaaatcaaaactaagagaattagattaatttccttcggtgaaacagaagcaaaattctcaca |
9695462 |
T |
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| Q |
101 |
gcatcagacagagctttccattcctttccaccggctttcccaacctgattcaaattcaccgtaaatcacgttag |
174 |
Q |
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| T |
9695461 |
gcatcagacagagctttccattcctttccaccggctttcccaacctgattcaaattcaccgtaaatcacgttag |
9695388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 230 - 278
Target Start/End: Complemental strand, 9695332 - 9695284
Alignment:
| Q |
230 |
gcgtcagaaatctcaccacagcaacggacttgttgcttggattctcctt |
278 |
Q |
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| T |
9695332 |
gcgtcagaaatctcaccacagcaacggacttgttgcttggattctcctt |
9695284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 116 - 174
Target Start/End: Original strand, 30440131 - 30440189
Alignment:
| Q |
116 |
ttccattcctttccaccggctttcccaacctgattcaaattcaccgtaaatcacgttag |
174 |
Q |
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| T |
30440131 |
ttccattcctttccaccaactttcccaacctaattcaaattcaccgtaaatcacgttag |
30440189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0405 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0405
Description:
Target: scaffold0405; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 14929 - 15039
Alignment:
| Q |
1 |
gccttatcctaaaatacaca--aatcacaaaaacgactttaaaatcaaa--actaa--gagaattagattaatttccttcggtgaaacagaagcaaaatt |
94 |
Q |
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|||||||||||||||||||| ||||||||||| || |||||||||||| || || ||| ||| |||||||| |||| |||||||||| | ||||| |
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| T |
14929 |
gccttatcctaaaatacacataaatcacaaaaatgaatttaaaatcaaaacacgaattaagatttatattaattttcttcagtgaaacagaggtgaaatt |
15028 |
T |
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| Q |
95 |
ctcacagcatc |
105 |
Q |
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| T |
15029 |
ctcacagcatc |
15039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0405; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 160
Target Start/End: Original strand, 15071 - 15111
Alignment:
| Q |
120 |
attcctttccaccggctttcccaacctgattcaaattcacc |
160 |
Q |
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|||| |||||||| ||||||||||||| ||||||||||||| |
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| T |
15071 |
attcttttccaccagctttcccaacctaattcaaattcacc |
15111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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