View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0159_low_2 (Length: 300)
Name: NF0159_low_2
Description: NF0159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0159_low_2 |
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| [»] scaffold0405 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 9695537 - 9695794
Alignment:
| Q |
1 |
tgatttgtgtattttaggataaggctccattcattgctaaggctgataaattgaaggaggagtatgagaagacaatgcgtgcttacaatatgggaattgt |
100 |
Q |
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| T |
9695537 |
tgatttgtgtattttaggataaggctccattcattgctaaggctgataaattgaaggaggagtatgagaaaacaatgcgtgcttacaatatgggaattgt |
9695636 |
T |
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| Q |
101 |
aattacttttatcacttttctgttactctgatttttccgtgttctgattttacttggatttatatcttgtgtttgctgatttgagctaattttggtgcat |
200 |
Q |
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| T |
9695637 |
aattacttttatcacttttctgtgactttgatttttccgtgttctgattttacttggatttatatctcgtgtttgctgatttgagctaattttggtgcat |
9695736 |
T |
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| Q |
201 |
tagactgagaagaatgcttcggaggaagaaggatctgagaagtccaagtctgaagtga |
258 |
Q |
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| T |
9695737 |
tagactgagaagaatgcttcggaggaagaaggatctgagaagtccaagtctgaagtga |
9695794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 6 - 244
Target Start/End: Complemental strand, 30440015 - 30439777
Alignment:
| Q |
6 |
tgtgtattttaggataaggctccattcattgctaaggctgataaattgaaggaggagtatgagaagacaatgcgtgcttacaatatgggaattgtaatta |
105 |
Q |
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| T |
30440015 |
tgtgtattttaggataaggctcgattcattgctaagtttgagaagttcaaggaggagtatgaggagacaatgcttgcgtacaatatgggaattgtaatta |
30439916 |
T |
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| Q |
106 |
cttttatcacttttctgttactctgatttttccgtgttctgattttacttggatttatatcttgtgtttgctgatttgagctaattttggtgcattagac |
205 |
Q |
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| T |
30439915 |
cttttataacttctctgttactgtgaatttttactgttcttattttacttggatttatattacctttttgctgatttgaactaattttgatgtcttagac |
30439816 |
T |
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| Q |
206 |
tgagaagaatgcttcggaggaagaaggatctgagaagtc |
244 |
Q |
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| T |
30439815 |
cgagaataatgcttcagaggaagaaggatttgataagtc |
30439777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0405 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: scaffold0405
Description:
Target: scaffold0405; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 6 - 254
Target Start/End: Complemental strand, 14948 - 14700
Alignment:
| Q |
6 |
tgtgtattttaggataaggctccattcattgctaaggctgataaattgaaggaggagtatgagaagacaatgcgtgcttacaatatgggaattgtaatta |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
14948 |
tgtgtattttaggataaggctccattcattgctaaggctgagaagttgaaggaggagtatgagaagacaatgcgtgcttacaacatgggaattgtaatta |
14849 |
T |
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| Q |
106 |
cttttatcacttttctgttactctgatttttccgtgttctgattttacttggatttatatcttgtgtttgctgatttgagctaattttggtgcattagac |
205 |
Q |
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| T |
14848 |
tttctataacttttctgttactgtgaatttttactgctcttattttacttggatttatattaactttttgctgatttgaactaattttgatgtcttagac |
14749 |
T |
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| Q |
206 |
tgagaagaatgcttcggaggaagaaggatctgagaagtccaagtctgaa |
254 |
Q |
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|||||||||||||||||| |||||||||||| | ||||| ||||||||| |
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| T |
14748 |
tgagaagaatgcttcggaagaagaaggatctcataagtctaagtctgaa |
14700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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