View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0159_low_3 (Length: 277)
Name: NF0159_low_3
Description: NF0159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0159_low_3 |
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| [»] scaffold0055 (1 HSPs) |
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| [»] scaffold0052 (1 HSPs) |
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| [»] scaffold0689 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0055 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: scaffold0055
Description:
Target: scaffold0055; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 11 - 255
Target Start/End: Original strand, 1699 - 1943
Alignment:
| Q |
11 |
cacagacagaaagtccttttcagaatgatggagtaacatttcttcttaggcccgaaccaaggaatcctatcaatatgattcgaaatggatctcgttctat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1699 |
cacagacagaaagtccttttcagaatgatggagtaacatttcttattaggcccgaaccaaggaatcctatcaatatgattcaaaatggatctcgttctat |
1798 |
T |
|
| Q |
111 |
ccttgatcatagatttctctatgaaaaatatgaatcggggttcgaagaaggggaaggagtcctcgacccgctagaggaggatttattgaatcacatagtt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1799 |
ccttgatcatagatttctctatgaaaaatatgaatcggggttcgaagaaggggaaggagtcctcgacccgctagaggaggatttattgaatcacatagtt |
1898 |
T |
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| Q |
211 |
tgggctcctagaatatggcgcccttgggaatttctatttgatgat |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1899 |
tgggctcctagaatatggcgcccttgggaatttctatttgatgat |
1943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: scaffold0052
Description:
Target: scaffold0052; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 11 - 255
Target Start/End: Complemental strand, 82836 - 82592
Alignment:
| Q |
11 |
cacagacagaaagtccttttcagaatgatggagtaacatttcttcttaggcccgaaccaaggaatcctatcaatatgattcgaaatggatctcgttctat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
82836 |
cacagacagaaagtccttttcagaatgatggagtaacatttcttattaggcccgaaccaaggaatcctatcaatatgattcaaaatggatctcgttctat |
82737 |
T |
|
| Q |
111 |
ccttgatcatagatttctctatgaaaaatatgaatcggggttcgaagaaggggaaggagtcctcgacccgctagaggaggatttattgaatcacatagtt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
82736 |
ccttgatcatagatttctctatgaaaaatatgaatcggggttcgaagaaggggaaggagtcctcgacccgctagaggaggatttattgaatcacatagtt |
82637 |
T |
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| Q |
211 |
tgggctcctagaatatggcgcccttgggaatttctatttgatgat |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
82636 |
tgggctcctagaatatggcgcccttgggaatttctatttgatgat |
82592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 255
Target Start/End: Original strand, 18353689 - 18353933
Alignment:
| Q |
11 |
cacagacagaaagtccttttcagaatgatggagtaacatttcttcttaggcccgaaccaaggaatcctatcaatatgattcgaaatggatctcgttctat |
110 |
Q |
| |
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||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
18353689 |
cacagacaggaagtccttttgagaatgatggagtaacatttcttcttaggcccgaaccaaggaatcctatcaatatgattcaaaatggatctcgttctat |
18353788 |
T |
|
| Q |
111 |
ccttgatcatagatttctctatgaaaaatatgaatcggggttcgaagaaggggaaggagtcctcgacccgctagaggaggatttattgaatcacatagtt |
210 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18353789 |
ccttgatcatagatttctctatgaaaaaaatgaatcggggttcgaagaaggggaaggagtcctcgacccgctagaggaggatttattgaatcacatagtt |
18353888 |
T |
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| Q |
211 |
tgggctcctagaatatggcgcccttgggaatttctatttgatgat |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18353889 |
tgggctcctagaatatggcgcccttgggaatttctatttgatgat |
18353933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 255
Target Start/End: Complemental strand, 13231936 - 13231692
Alignment:
| Q |
11 |
cacagacagaaagtccttttcagaatgatggagtaacatttcttcttaggcccgaaccaaggaatcctatcaatatgattcgaaatggatctcgttctat |
110 |
Q |
| |
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||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
13231936 |
cacagacaggaagtccttttgagaatgatggagtaacatttcttcttaggcccgaaccaaggaatcctatcaatatgattcaaaatggatctcgttctat |
13231837 |
T |
|
| Q |
111 |
ccttgatcatagatttctctatgaaaaatatgaatcggggttcgaagaaggggaaggagtcctcgacccgctagaggaggatttattgaatcacatagtt |
210 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13231836 |
ccttgatcatagatttctctatgaaaaaaatgaatcggggttcgaagaaggggaaggagtcctcgacccgctagaggaggatttattgaatcacatagtt |
13231737 |
T |
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| Q |
211 |
tgggctcctagaatatggcgcccttgggaatttctatttgatgat |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13231736 |
tgggctcctagaatatggcgcccttgggaatttctatttgatgat |
13231692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 34 - 226
Target Start/End: Complemental strand, 36347223 - 36347023
Alignment:
| Q |
34 |
aatgatggagtaacatttcttcttaggcccgaaccaaggaatcc--tatcaatatgattcgaaatggatctcgttctatccttgatcatagatttctcta |
131 |
Q |
| |
|
||||||||||| ||||| |||||| |||||||||||| ||||| || |||||||||| ||||||| ||||| |||| ||||||||| ||||| || |
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| T |
36347223 |
aatgatggagtgacattccttcttgggcccgaaccaacaaatcccttaaaaatatgattcaaaatggacatcgttttatctttgatcatatttttcttta |
36347124 |
T |
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| Q |
132 |
tgaaaaatatgaatcggggttcgaagaaggggaaggagtcctcgacc------cgctagaggaggatttattgaatcacatagtttgggctcctagaata |
225 |
Q |
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|
|||||| |||||||| |||||||||||||||||||||||||| |||| ||| |||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
36347123 |
tgaaaactatgaatcagggttcgaagaaggggaaggagtccttgaccaacaattgctggaggaggatttattcaatcacaaagtttgggctcctagaata |
36347024 |
T |
|
| Q |
226 |
t |
226 |
Q |
| |
|
| |
|
|
| T |
36347023 |
t |
36347023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 82 - 252
Target Start/End: Original strand, 14504342 - 14504516
Alignment:
| Q |
82 |
aatatgattcgaaatggatctcgttctatccttgatcatagatttctctatgaaaaatatgaatcggggttcgaagaaggggaaggagtcctcgac---- |
177 |
Q |
| |
|
|||||||||| |||||||||| ||||||| |||||||| |||| | |||||||||||||| ||||||||||||||||||| | |||||||| || |
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| T |
14504342 |
aatatgattcaaaatggatctagttctattgttgatcattgattcc-ctatgaaaaatatgtatcggggttcgaagaagggtcaagagtcctcaacccgc |
14504440 |
T |
|
| Q |
178 |
--ccgctagaggaggatttattgaatcacatagtttgggctcctagaatatggcgcccttgggaatttctatttgat |
252 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||||||||| | ||||||||| |||||||||||| |
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| T |
14504441 |
aaccgctagaggaagatttattcaatcacatagtttgggctcctagaatat-gagcccttggggctttctatttgat |
14504516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0689 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0689
Description:
Target: scaffold0689; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 34 - 252
Target Start/End: Original strand, 4105 - 4335
Alignment:
| Q |
34 |
aatgatggagtaacatttcttcttaggcccgaaccaaggaatcctatcaatatgattcgaaatggatctcgttctatccttgatcatagatttctctatg |
133 |
Q |
| |
|
|||||| |||| ||||| |||||| || |||| || ||||||| | ||||||| | |||| ||||| |||||||| ||||||| ||| |||||||| |
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|
| T |
4105 |
aatgatcgagtgacattgcttcttcggtccgagccggggaatcccttatatatgatgcaaaatagatcttgttctatcgttgatcagagaaatctctatg |
4204 |
T |
|
| Q |
134 |
aaaaatatgaatcggggttcgaagaaggggaaggag------tcctcgacccgc------tagaggaggatttattgaatcacatagtttgggctcctag |
221 |
Q |
| |
|
||||||| ||||||| ||| |||||||||||||||| | |||||||||| |||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
4205 |
aaaaatacgaatcggagtttgaagaaggggaaggagaaggagtactcgacccgcaacagatagaggaggatttattcaatcacatagtttgggctcctag |
4304 |
T |
|
| Q |
222 |
aatatggcgcccttgggaatttctatttgat |
252 |
Q |
| |
|
|||||||||||||||| |||||||||||| |
|
|
| T |
4305 |
gatatggcgcccttggggctttctatttgat |
4335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 252
Target Start/End: Complemental strand, 196236 - 196194
Alignment:
| Q |
210 |
ttgggctcctagaatatggcgcccttgggaatttctatttgat |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
196236 |
ttgggctcctagaatatggcgcccttgggacaatctatttgat |
196194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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