View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0160-INSERTION-10 (Length: 770)

Name: NF0160-INSERTION-10
Description: NF0160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0160-INSERTION-10
NF0160-INSERTION-10
[»] chr7 (1 HSPs)
chr7 (2-770)||(48166113-48166881)


Alignment Details
Target: chr7 (Bit Score: 669; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 669; E-Value: 0
Query Start/End: Original strand, 2 - 770
Target Start/End: Complemental strand, 48166881 - 48166113
Alignment:
Q  2 ccaacacaagtttcttcattgatgattctaggttcacaaaacgaaattatgtcaatttcattgttagtttatttatgacagtctacaccattattagtgg 101  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  48166881 ccaacacaagtttcttcattgatgattctaggttcacaaaacaaaattatgtcaatttcattgttagtttatttatgacaatctacaccattattagtgg 48166782  T
Q  102 tgtatatttttcgtcnnnnnnnntcgtgaaatagactattaaacggacttaccaaaaagtcaggtcaaaccttaaaaatgagcctatggcagactaatag 201  Q
    |||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48166781 tgtatatttttcgtcaaaaaaaatcgtgaaatagactattaaacggacttaccaaaaagtcaggtcaaaccttaaaaatgagcctatggcagactaatag 48166682  T
Q  202 gacagattgaagcctaacattttcaaagcaagtcatgttcagcctagcaaagtttaacctagtctattttcacctatgttatgtagcactgacaaattcg 301  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |  |||||||    
T  48166681 gacagattgaagcctaacattttcaaagtaagtcatgttcagcctagcaaagtttaacctagtctattttcacctttgttatgtagcaccggaaaattcg 48166582  T
Q  302 attgaaagcgtgtgtagtatcagactcgtgtcaggatctgatgccaacacatatattatattcaattactcagttttctcaaattattaccagtggagac 401  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  48166581 attgaaagcgtgtgtagtatcagactcgtgtcaggatgtgataccaacacatatattatattcaattattcacttttctcaaattattaccagtggagac 48166482  T
Q  402 atattagtgtcgtgtccagtgtccctatttgtgtcagtagttcatagactctcacccttaagtgtgatttataacattggtatagtaatcttactctttt 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |    
T  48166481 atattagtgtcgtgtccagtgtccctatttgtgtcagtagttcatagactctcacccctaagtgtgatttataacattggtataataatcttactcttgt 48166382  T
Q  502 tatgtaccgcaggaggtggcaagcagcgcaagaatttgtcagcaaggaaaggatcatttggttgttcaaatgcaacagcaacaagagctgctactccaca 601  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48166381 tatgtactgctggaggtggcaagcagcgcaagaatttgtcagcaaggaaaggatcatttggttgttcaaatgcaacagcaacaagagctgctactccaca 48166282  T
Q  602 aatggctctctcagtatcattgctcattgtgtcatacaaattatctctcagattcaatattgcacttgtacaatccgcacacgactcatcaaacgaaagg 701  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48166281 aatggctctctcagtatcattgctcattgtgtcatataaattatctctcagattcaatattgcacttgtacaatccgcacacgactcatcaaacgaaagg 48166182  T
Q  702 tcgaagtggctgcattggttcaatgcatctgactacttttgcaagccttgaacagttagcaaagataaa 770  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  48166181 tcgaagtggctgcattggttcaatgcatctgagtacttttgcgagccttgaacagttagcaaagataaa 48166113  T

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