View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0160-INSERTION-3 (Length: 639)
Name: NF0160-INSERTION-3
Description: NF0160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0160-INSERTION-3 |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 2e-81; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 351 - 504
Target Start/End: Complemental strand, 14472246 - 14472093
Alignment:
| Q |
351 |
ccttagggctagagaattgttctattatttgaaaggaggacaagttgattacggcgaagaacatagcaaggcgtgtggacattcgcagtttggaagagtc |
450 |
Q |
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| T |
14472246 |
ccttagggctagagaattgttctattatttgaaaggaggacaagttgattacggcgaagaacatagcaaggcgtgtggacattcgcagtttggaagagtc |
14472147 |
T |
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| Q |
451 |
tatgaacaaggtttggacatttgagatcttcatgttatgtttattgttgtagca |
504 |
Q |
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| T |
14472146 |
tatgaacaaggtttggacatttgagatcttcatgttatgtttattgttgtagca |
14472093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 167 - 289
Target Start/End: Complemental strand, 14472430 - 14472308
Alignment:
| Q |
167 |
cagagattaggtggtttatcatattttgctggagcagagaagaaagatgaaagggttcttgttcctgatctagggtctttaacaagcatctatgataggt |
266 |
Q |
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| T |
14472430 |
cagagattaggtggtttatcatattttgctggagcagagaagaaagatgaaagggttcttgttcctgatctagggtctttaacaagcatctatgataggt |
14472331 |
T |
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| Q |
267 |
aagttcatggaatttttatctta |
289 |
Q |
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| T |
14472330 |
aagttcatggaatttttatctta |
14472308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 14472590 - 14472504
Alignment:
| Q |
7 |
aaaagattcaaaatttgataatgatcttcctcctatagttttggttcatggaatttttggatttggcaaaggggtaatgattcatca |
93 |
Q |
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| T |
14472590 |
aaaagattcaaaatttgataatgatcttcctcctattgttttggttcatggaatttttggatttggcaaaggggtaatgattcatca |
14472504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 592 - 639
Target Start/End: Complemental strand, 14472015 - 14471968
Alignment:
| Q |
592 |
gtatacacaggacattatcctgaatgtgatgaggatcatcctattcat |
639 |
Q |
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| T |
14472015 |
gtatacacaggacattatcctgaatgggatgaggatcatcctattcat |
14471968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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