View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0160-INSERTION-7 (Length: 604)
Name: NF0160-INSERTION-7
Description: NF0160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0160-INSERTION-7 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 284 - 604
Target Start/End: Complemental strand, 42465258 - 42464934
Alignment:
| Q |
284 |
aagttattgtctagaaacagtattgctagccaatgatgtagttacatggagaatgatccaggaatattatatcattaccgtatttcttaaataagtaaag |
383 |
Q |
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| T |
42465258 |
aagttattgtctagaaacagtattgctagccaatgatgtagttacatggagaatgatccaggaatattatatcattaccgtatttcttaaataagtaaag |
42465159 |
T |
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| Q |
384 |
aaaatggtgttactgtacaaaatataaagtcgtgccaacatgtttaatcatatgatatatc----cagaggattatcaattcattcacagctgcacgttg |
479 |
Q |
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| T |
42465158 |
aaaatggtgttactgtacaaaatataaagtcgtgccaacatgtttaatcatatgatatatcctctcagaggattaacaattctttcacagctgcacgttg |
42465059 |
T |
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| Q |
480 |
ttaattatataattaaacattttcactagctgaatttagatattcaaaaagtacatagaagtccatgaaattgaacttaaatacctcaaagtggttttta |
579 |
Q |
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| T |
42465058 |
ttaattatataattaaacattttcactagctgaatttagatattcaaaaagtacatagaagtccatgaaattgaacttaaatacctcaaagtggttttta |
42464959 |
T |
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| Q |
580 |
gctagtctagattctaggcatttat |
604 |
Q |
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| T |
42464958 |
gctagtctagagtctaggcatttat |
42464934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 89 - 253
Target Start/End: Complemental strand, 42465453 - 42465289
Alignment:
| Q |
89 |
tgtataaattaatgaatgtgattaatggatgctcattgatttgtacttgcacatgtgttcttatatataactttcaatttcagtagcacgtcactaattg |
188 |
Q |
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| T |
42465453 |
tgtataaattaatgaatgtgattaatggatgctcattgatttgtacttgtacatgtgttcttatatataactttcaatttcagttgcacgtcactaattg |
42465354 |
T |
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| Q |
189 |
aaagaagttgccttcgtgaatcccacgaatatgtctctatctttgctagtcagcaatattactga |
253 |
Q |
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| T |
42465353 |
aaagaagttgccttcgtgaatcccacgaatatgtctctatctttgctagtcaacaatattactga |
42465289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 7 - 90
Target Start/End: Complemental strand, 42465510 - 42465427
Alignment:
| Q |
7 |
atgtaagtgtaatgaacaagctacagtattgatagattgcagccattgttaagattctgtataaagtaatgaatgtgattaatg |
90 |
Q |
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| T |
42465510 |
atgtaagtgtaatgaacaagctacaatattgatagattgcagccattgttaagattctgtataaattaatgaatgtgattaatg |
42465427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 92 - 190
Target Start/End: Complemental strand, 23920046 - 23919948
Alignment:
| Q |
92 |
ataaattaatgaatgtgattaatggatgctcattgatttgtacttgcacatgtgttcttatatataactttcaatttcagtagcacgtcactaattgaa |
190 |
Q |
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| T |
23920046 |
ataaattaatgaatgggattaatggatgctcattgatttgtacttgtacgtgtgttcttatatataaccaccaataccagttgcacgtaactaattgaa |
23919948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 23920071 - 23920023
Alignment:
| Q |
42 |
attgcagccattgttaagattctgtataaagtaatgaatgtgattaatg |
90 |
Q |
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| T |
23920071 |
attgcaaccattgttaagattctggataaattaatgaatgggattaatg |
23920023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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