View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0160-INSERTION-8 (Length: 816)

Name: NF0160-INSERTION-8
Description: NF0160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0160-INSERTION-8
NF0160-INSERTION-8
[»] chr3 (7 HSPs)
chr3 (8-664)||(53820604-53821260)
chr3 (708-816)||(53821271-53821378)
chr3 (667-719)||(25124711-25124763)
chr3 (662-719)||(33896664-33896721)
chr3 (667-719)||(25353872-25353924)
chr3 (677-726)||(42380551-42380600)
chr3 (677-726)||(42409265-42409314)
[»] chr7 (4 HSPs)
chr7 (657-726)||(32553689-32553758)
chr7 (667-719)||(28885489-28885541)
chr7 (657-719)||(19989086-19989148)
chr7 (657-719)||(31448371-31448433)
[»] chr1 (3 HSPs)
chr1 (668-719)||(59652-59703)
chr1 (671-726)||(15906301-15906356)
chr1 (662-717)||(43325678-43325733)
[»] scaffold0009 (1 HSPs)
scaffold0009 (662-730)||(143362-143430)
[»] chr4 (3 HSPs)
chr4 (668-716)||(46399740-46399788)
chr4 (667-726)||(44302375-44302434)
chr4 (657-719)||(32564836-32564898)
[»] chr8 (5 HSPs)
chr8 (667-726)||(44068308-44068367)
chr8 (667-709)||(6438225-6438267)
chr8 (657-719)||(15196507-15196569)
chr8 (667-719)||(4410803-4410855)
chr8 (657-719)||(38125591-38125653)
[»] chr2 (7 HSPs)
chr2 (657-728)||(38985132-38985203)
chr2 (667-726)||(43939437-43939496)
chr2 (666-719)||(21924843-21924896)
chr2 (662-719)||(33810628-33810685)
chr2 (657-716)||(12457024-12457083)
chr2 (668-719)||(16152554-16152605)
chr2 (657-719)||(9154142-9154204)
[»] scaffold0001 (1 HSPs)
scaffold0001 (657-726)||(504591-504660)
[»] chr5 (5 HSPs)
chr5 (667-711)||(16725037-16725081)
chr5 (667-726)||(9475099-9475158)
chr5 (667-710)||(28601946-28601989)
chr5 (667-717)||(3103168-3103218)
chr5 (657-726)||(30264550-30264619)
[»] scaffold0064 (1 HSPs)
scaffold0064 (657-718)||(59408-59469)


Alignment Details
Target: chr3 (Bit Score: 629; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 629; E-Value: 0
Query Start/End: Original strand, 8 - 664
Target Start/End: Original strand, 53820604 - 53821260
Alignment:
Q  8 cttatagcaatttgaactgaggaatgttcttctttaaggtataaaatcgatgtttggaacattccataagcatcgacgaagcgaagagaatattctagaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  53820604 cttatagcaatttgaactgaggaatgttcttctttaaggtataaaatcgatgtttggaacattccataagcgtcgacgaagcgaagagaatattctagaa 53820703  T
Q  108 ggttctccatccattgaggatggtaacggagtgattcttgggtttgtggaagttggagaatgtcttgaaaagtttcgtatgtttgtttgagaagagttaa 207  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  53820704 ggttctccacccattgaggatggtaacggagtgattcttgggtttgtggaagttggagaatgtcttgaaaagtttcgtatgtttgttggagaagagttaa 53820803  T
Q  208 accgttggagaggtttttggacgttagtggttgagattttgaagtggaattagtccaggattttaggccgttgatctcatctttgatctgggaaattaac 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53820804 accgttggagaggtttttggacgttagtggttgagattttgaagtggaattagtccaggattttaggccgttgatctcatctttgatctgggaaattaac 53820903  T
Q  308 ggatgagatctgcagggaagacttatggatctgatgtggtgtgatatttgtggtttttgtgatggacggttgggatttttgtttggaaatgaaactgaac 407  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53820904 ggatgagatcggcagggaagacttatggatctgatgtggtgtgatatttgtggtttttgtgatggacggttgggatttttgtttggaaatgaaactgaac 53821003  T
Q  408 gccgaaaaacacctaccattttttaaactaagtggcgtgaagaagaaatgttaagagaaaatagctagagaaaagttcagtgcttttgtgaggatgaaag 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  53821004 gccgaaaaacacctaccattttttaaactaagtggcgtgaagaagaaatgttaagagaaaatagctagagaaaagttctgtgcttttgtgaggatgaaag 53821103  T
Q  508 gattttatttctagtatttatatgcgtggttattgtttacacatgcacacgaacgagtaaggacatagatgccagctttttgctttaactatccaaactt 607  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53821104 gattttatttctagtatttatatgcatggttattgtttacacatgcacacgaacgagtaaggacatagatgccagctttttgctttaactatccaaactt 53821203  T
Q  608 tttgtctcaaataatgtcattttaatatcaaaattaatttgaagttctactccctcc 664  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  53821204 tttgtctgaaataatgtcattttaatatcaaaattaatttgaagttctactccctcc 53821260  T

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Target: chr3; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 708 - 816
Target Start/End: Original strand, 53821271 - 53821378
Alignment:
Q  708 tatagggacggatgaagtaattacacatgtgattgagataaaaaccgcgtgcaacggcatggnnnnnnnctgtaatatctgaactggaatcttttatgtt 807  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  53821271 tatagggacggagggagtaattacacatgtgattgagataaaaaccgcgtgcaacggcatgg-ttttttctgtaatatctgaactggaatcttttatgtt 53821369  T
Q  808 tttggttac 816  Q
    |||||||||    
T  53821370 tttggttac 53821378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 667 - 719
Target Start/End: Original strand, 25124711 - 25124763
Alignment:
Q  667 atatataagcacccttttattagagataaatgatgcttacatatagggacgga 719  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||| |||||||    
T  25124711 atatataagcacccttttattagaggtaaatgatgcttatatataaggacgga 25124763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 662 - 719
Target Start/End: Original strand, 33896664 - 33896721
Alignment:
Q  662 tcccaatatataagcacccttttattagagataaatgatgcttacatatagggacgga 719  Q
    |||| ||||||||||||||||| |||||||  ||||| || |||||||||||||||||    
T  33896664 tccctatatataagcaccctttcattagaggcaaatggtgtttacatatagggacgga 33896721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 667 - 719
Target Start/End: Original strand, 25353872 - 25353924
Alignment:
Q  667 atatataagcacccttttattagagataaatgatgcttacatatagggacgga 719  Q
    |||||||||||||||||||||||||| ||| | |||||| |||||| ||||||    
T  25353872 atatataagcacccttttattagagacaaacggtgcttatatatagagacgga 25353924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 677 - 726
Target Start/End: Complemental strand, 42380600 - 42380551
Alignment:
Q  677 acccttttattagagataaatgatgcttacatatagggacggatgaagta 726  Q
    |||||||||||||||  ||| | |||||||||||||||||||||| ||||    
T  42380600 acccttttattagaggcaaagggtgcttacatatagggacggatggagta 42380551  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 677 - 726
Target Start/End: Complemental strand, 42409314 - 42409265
Alignment:
Q  677 acccttttattagagataaatgatgcttacatatagggacggatgaagta 726  Q
    |||||||||||||||  ||| | |||||||||||||||||||||| ||||    
T  42409314 acccttttattagaggcaaagggtgcttacatatagggacggatggagta 42409265  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 657 - 726
Target Start/End: Original strand, 32553689 - 32553758
Alignment:
Q  657 ctccctcccaatatataagcacccttttattagagataaatgatgcttacatatagggacggatgaagta 726  Q
    |||| |||| |||| ||| ||||||||||||||||| |||||||| |||||||||| |||||||||||||    
T  32553689 ctccgtccctatatgtaaacacccttttattagagacaaatgatgtttacatatagagacggatgaagta 32553758  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 667 - 719
Target Start/End: Complemental strand, 28885541 - 28885489
Alignment:
Q  667 atatataagcacccttttattagagataaatgatgcttacatatagggacgga 719  Q
    |||| ||||||||||||||||||||  ||||| ||||||||||||||||||||    
T  28885541 atatgtaagcacccttttattagaggaaaatggtgcttacatatagggacgga 28885489  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 657 - 719
Target Start/End: Complemental strand, 19989148 - 19989086
Alignment:
Q  657 ctccctcccaatatataagcacccttttattagagataaatgatgcttacatatagggacgga 719  Q
    |||| |||| |||| |||||||| |||||||||||  ||||| |||||||||||||| |||||    
T  19989148 ctccgtccctatatctaagcaccattttattagaggcaaatggtgcttacatataggaacgga 19989086  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 657 - 719
Target Start/End: Complemental strand, 31448433 - 31448371
Alignment:
Q  657 ctccctcccaatatataagcacccttttattagagataaatgatgcttacatatagggacgga 719  Q
    |||| |||| |||| |||||||||||||||||||   ||| | ||||||||||||||||||||    
T  31448433 ctccgtccctatatctaagcacccttttattagatgcaaagggtgcttacatatagggacgga 31448371  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 668 - 719
Target Start/End: Original strand, 59652 - 59703
Alignment:
Q  668 tatataagcacccttttattagagataaatgatgcttacatatagggacgga 719  Q
    |||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  59652 tatataagcaccattttattagagataaatggtgcttatatatagggacgga 59703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 671 - 726
Target Start/End: Original strand, 15906301 - 15906356
Alignment:
Q  671 ataagcacccttttattagagataaatgatgcttacatatagggacggatgaagta 726  Q
    |||| ||||||||||||||||  |||||||| ||| ||||||||||||||||||||    
T  15906301 ataaacacccttttattagaggcaaatgatgtttatatatagggacggatgaagta 15906356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 662 - 717
Target Start/End: Complemental strand, 43325733 - 43325678
Alignment:
Q  662 tcccaatatataagcacccttttattagagataaatgatgcttacatatagggacg 717  Q
    |||| |||| ||||||| ||||||||||||| ||||||||||||||| || |||||    
T  43325733 tccctatatgtaagcactcttttattagagaaaaatgatgcttacatgtaaggacg 43325678  T

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Target: scaffold0009 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 662 - 730
Target Start/End: Original strand, 143362 - 143430
Alignment:
Q  662 tcccaatatataagcacccttttattagagataaatgatgcttacatatagggacggatgaagtaatta 730  Q
    |||| |||| ||| ||||||||||||||||  ||| |||||||||||||||||||||| | ||||||||    
T  143362 tccctatatgtaaacacccttttattagaggcaaaggatgcttacatatagggacggagggagtaatta 143430  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 668 - 716
Target Start/End: Original strand, 46399740 - 46399788
Alignment:
Q  668 tatataagcacccttttattagagataaatgatgcttacatatagggac 716  Q
    |||||||||||| ||||||||||| ||||||||||||| ||||||||||    
T  46399740 tatataagcaccattttattagaggtaaatgatgcttatatatagggac 46399788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 667 - 726
Target Start/End: Complemental strand, 44302434 - 44302375
Alignment:
Q  667 atatataagcacccttttattagagataaatgatgcttacatatagggacggatgaagta 726  Q
    |||| ||||||||||||||||||||  ||| |||||||| |||||| |||||| ||||||    
T  44302434 atatttaagcacccttttattagaggaaaaagatgcttagatatagagacggaggaagta 44302375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 657 - 719
Target Start/End: Complemental strand, 32564898 - 32564836
Alignment:
Q  657 ctccctcccaatatataagcacccttttattagagataaatgatgcttacatatagggacgga 719  Q
    |||| |||| |||| ||||||||||||||||||||  |||   ||||||||||||||||||||    
T  32564898 ctccgtccctatatgtaagcacccttttattagaggcaaagagtgcttacatatagggacgga 32564836  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000008; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 667 - 726
Target Start/End: Complemental strand, 44068367 - 44068308
Alignment:
Q  667 atatataagcacccttttattagagataaatgatgcttacatatagggacggatgaagta 726  Q
    |||| ||||||| ||||||||||||| ||| |||||||||||||||| ||||||| ||||    
T  44068367 atatctaagcacacttttattagagacaaacgatgcttacatataggaacggatggagta 44068308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 667 - 709
Target Start/End: Original strand, 6438225 - 6438267
Alignment:
Q  667 atatataagcacccttttattagagataaatgatgcttacata 709  Q
    |||| ||||||||||||||||||||||||||| ||||||||||    
T  6438225 atatgtaagcacccttttattagagataaatggtgcttacata 6438267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 657 - 719
Target Start/End: Complemental strand, 15196569 - 15196507
Alignment:
Q  657 ctccctcccaatatataagcacccttttattagagataaatgatgcttacatatagggacgga 719  Q
    |||| |||| |||| |||||||||||||||||||   ||| ||||||||||||||||||||||    
T  15196569 ctccgtccctatatctaagcacccttttattagaagaaaaagatgcttacatatagggacgga 15196507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 667 - 719
Target Start/End: Complemental strand, 4410855 - 4410803
Alignment:
Q  667 atatataagcacccttttattagagataaatgatgcttacatatagggacgga 719  Q
    |||||||||||| ||||||||||||| ||| | |||||| |||||||||||||    
T  4410855 atatataagcactcttttattagagacaaagggtgcttatatatagggacgga 4410803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 657 - 719
Target Start/End: Complemental strand, 38125653 - 38125591
Alignment:
Q  657 ctccctcccaatatataagcacccttttattagagataaatgatgcttacatatagggacgga 719  Q
    |||| |||| |||| ||||||||||||||||||||  ||| | |||||||||||| |||||||    
T  38125653 ctccgtccctatatgtaagcacccttttattagaggcaaaaggtgcttacatatatggacgga 38125591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000008; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 657 - 728
Target Start/End: Original strand, 38985132 - 38985203
Alignment:
Q  657 ctccctcccaatatataagcacccttttattagagataaatgatgcttacatatagggacggatgaagtaat 728  Q
    |||| |||| |||||||||||| ||||||||||||  ||||| |||||| ||||||||||||| | ||||||    
T  38985132 ctccgtccctatatataagcactcttttattagagggaaatggtgcttatatatagggacggaaggagtaat 38985203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 667 - 726
Target Start/End: Complemental strand, 43939496 - 43939437
Alignment:
Q  667 atatataagcacccttttattagagataaatgatgcttacatatagggacggatgaagta 726  Q
    |||| ||||||||||||||||||||  ||||  |||||||||||||||||||| ||||||    
T  43939496 atatctaagcacccttttattagaggcaaatagtgcttacatatagggacggaggaagta 43939437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 666 - 719
Target Start/End: Complemental strand, 21924896 - 21924843
Alignment:
Q  666 aatatataagcacccttttattagagataaatgatgcttacatatagggacgga 719  Q
    ||||| |||||||||||||||||||| |||| | |||||| |||||||||||||    
T  21924896 aatatttaagcacccttttattagaggtaaaaggtgcttatatatagggacgga 21924843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 662 - 719
Target Start/End: Original strand, 33810628 - 33810685
Alignment:
Q  662 tcccaatatataagcacccttttattagagataaatgatgcttacatatagggacgga 719  Q
    |||| |||| ||||||||||||||||||||  ||||  ||||||||||||||||||||    
T  33810628 tccctatatgtaagcacccttttattagaggaaaattgtgcttacatatagggacgga 33810685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 657 - 716
Target Start/End: Original strand, 12457024 - 12457083
Alignment:
Q  657 ctccctcccaatatataagcacccttttattagagataaatgatgcttacatatagggac 716  Q
    |||| |||| |||| ||||||||||||||||||||  ||| | |||||||||||||||||    
T  12457024 ctccgtccctatatctaagcacccttttattagaggcaaagggtgcttacatatagggac 12457083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 668 - 719
Target Start/End: Original strand, 16152554 - 16152605
Alignment:
Q  668 tatataagcacccttttattagagataaatgatgcttacatatagggacgga 719  Q
    ||||||||||||||||||||||||| ||| | |||||| ||||| |||||||    
T  16152554 tatataagcacccttttattagagacaaagggtgcttatatatatggacgga 16152605  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 657 - 719
Target Start/End: Complemental strand, 9154204 - 9154142
Alignment:
Q  657 ctccctcccaatatataagcacccttttattagagataaatgatgcttacatatagggacgga 719  Q
    |||| |||| |||| ||||||||||||||||||||  ||| | || |||||||||||||||||    
T  9154204 ctccgtccctatatctaagcacccttttattagaggaaaagggtggttacatatagggacgga 9154142  T

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Target: scaffold0001 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 657 - 726
Target Start/End: Complemental strand, 504660 - 504591
Alignment:
Q  657 ctccctcccaatatataagcacccttttattagagataaatgatgcttacatatagggacggatgaagta 726  Q
    |||| |||| |||| |||||||| |||||||||||| ||| | |||||||||||| | ||||||||||||    
T  504660 ctccgtccctatatgtaagcacctttttattagagacaaaaggtgcttacatataagaacggatgaagta 504591  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 667 - 711
Target Start/End: Original strand, 16725037 - 16725081
Alignment:
Q  667 atatataagcacccttttattagagataaatgatgcttacatata 711  Q
    |||| ||||||||||||||||||||  ||||||||||||||||||    
T  16725037 atatgtaagcacccttttattagaggcaaatgatgcttacatata 16725081  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 667 - 726
Target Start/End: Original strand, 9475099 - 9475158
Alignment:
Q  667 atatataagcacccttttattagagataaatgatgcttacatatagggacggatgaagta 726  Q
    ||||||||||||| ||||||| |||  ||| | |||||||||||||||||||| ||||||    
T  9475099 atatataagcaccattttattcgaggcaaaaggtgcttacatatagggacggaagaagta 9475158  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 667 - 710
Target Start/End: Original strand, 28601946 - 28601989
Alignment:
Q  667 atatataagcacccttttattagagataaatgatgcttacatat 710  Q
    |||| ||||||||||||||||||||||||||| |||||| ||||    
T  28601946 atatctaagcacccttttattagagataaatggtgcttatatat 28601989  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 667 - 717
Target Start/End: Original strand, 3103168 - 3103218
Alignment:
Q  667 atatataagcacccttttattagagataaatgatgcttacatatagggacg 717  Q
    |||||||| |||||||||||||||| |||| | |||||| |||||||||||    
T  3103168 atatataaacacccttttattagaggtaaagggtgcttatatatagggacg 3103218  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 657 - 726
Target Start/End: Complemental strand, 30264619 - 30264550
Alignment:
Q  657 ctccctcccaatatataagcacccttttattagagataaatgatgcttacatatagggacggatgaagta 726  Q
    |||| |||| |||| ||||||| ||||||||||||  |||||||||||| ||| || || ||||||||||    
T  30264619 ctccgtccctatatctaagcactcttttattagaggcaaatgatgcttatatacagagatggatgaagta 30264550  T

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Target: scaffold0064 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 657 - 718
Target Start/End: Complemental strand, 59469 - 59408
Alignment:
Q  657 ctccctcccaatatataagcacccttttattagagataaatgatgcttacatatagggacgg 718  Q
    |||| |||| |||| ||||||||||||||||||||  ||||  |||||| ||||||||||||    
T  59469 ctccatccctatatgtaagcacccttttattagagggaaattgtgcttatatatagggacgg 59408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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