View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0160-INSERTION-9 (Length: 800)
Name: NF0160-INSERTION-9
Description: NF0160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0160-INSERTION-9 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 8 - 297
Target Start/End: Original strand, 27697579 - 27697868
Alignment:
| Q |
8 |
ttcctttggttaccatcccagtcctttttgctattcttcttcaatatgctttttgactctatgataatcaaaaccataagatgctacattactgagaatc |
107 |
Q |
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| T |
27697579 |
ttcctctggttaccatcccagtccttttgccttttcttcattaatattctttttggttttatgataatcaaaaccataaaatactacattgttgagaatc |
27697678 |
T |
|
| Q |
108 |
ctaacaaacctaaacttccccctggtcccaaaccattgcatatagttggtaatcttcctgaaatgcttgcaaacagatctgcaactaggtgggtacacaa |
207 |
Q |
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|||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||| | |||||||||| ||| ||||||| |
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| T |
27697679 |
ctaacaaacctaaacttcccccaggtcccaaaccatggcctatagttggtaatcttcctgaaatgcttgcaaacaaacctgcaactagttggatacacaa |
27697778 |
T |
|
| Q |
208 |
gactatggaggaattgaacactgaaatagcatgtattcgcctaggaaatgtcaatgttatccctgttacttgtccctccattgcccgcga |
297 |
Q |
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| T |
27697779 |
gaaaatggaagaattgaacactgaaatagcatgtattcgtctaggaaatgtcaatgttatccctgttacttgtccttccattgcccgcga |
27697868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 67 - 293
Target Start/End: Complemental strand, 27747312 - 27747086
Alignment:
| Q |
67 |
tatgataatcaaaaccataagatgctacattactgagaatcctaacaaacctaaacttccccctggtcccaaaccattgcatatagttggtaatcttcct |
166 |
Q |
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|||| |||||||||||||||||| | || | |||||| ||||| ||| | |||||||| || ||||||||||||| || ||| ||||||||| ||||| |
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| T |
27747312 |
tatggtaatcaaaaccataagataccacttagttgagaaccctaaaaaagccaaacttccacccggtcccaaaccatggcctatcgttggtaatattcct |
27747213 |
T |
|
| Q |
167 |
gaaatgcttgcaaacagatctgcaactaggtgggtacacaagactatggaggaattgaacactgaaatagcatgtattcgcctaggaaatgtcaatgtta |
266 |
Q |
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| T |
27747212 |
gaaatgcttgcaaataaacctgctactaggtggatacacaagataatggaagaattgaacactgaagtagcgtgtatccgcctaggaaatgtccatgtta |
27747113 |
T |
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| Q |
267 |
tccctgttacttgtccctccattgccc |
293 |
Q |
| |
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| T |
27747112 |
ttcctgttacctgtcccaccattgccc |
27747086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 67 - 293
Target Start/End: Complemental strand, 27727710 - 27727486
Alignment:
| Q |
67 |
tatgataatcaaaaccataagatgctacattactgagaatcctaacaaacctaaacttccccctggtcccaaaccattgcatatagttggtaatcttcct |
166 |
Q |
| |
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|||| |||||||| ||||||||| | || | | | |||| ||||||||||| |||||||| || ||||||||||||| || |||| ||||||| ||||| |
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| T |
27727710 |
tatgttaatcaaatccataagataccacttaattaagaaccctaacaaaccaaaacttccaccaggtcccaaaccatggcctatacttggtaacattcct |
27727611 |
T |
|
| Q |
167 |
gaaatgcttgcaaacagatctgcaactaggtgggtacacaagactatggaggaattgaacactgaaatagcatgtattcgcctaggaaatgtcaatgtta |
266 |
Q |
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|||||||||||||||| | |||||||||||||| |||| || ||||| ||| ||||||| |||||||| ||||| ||||||||||||||| |||||| |
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| T |
27727610 |
gaaatgcttgcaaacaaacctgcaactaggtggatacaaaatg--atggaagaaatgaacaccgaaatagcgtgtatccgcctaggaaatgtccatgtta |
27727513 |
T |
|
| Q |
267 |
tccctgttacttgtccctccattgccc |
293 |
Q |
| |
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| |||||||| |||||| ||||||||| |
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| T |
27727512 |
ttcctgttacctgtcccaccattgccc |
27727486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 72 - 293
Target Start/End: Complemental strand, 27714470 - 27714249
Alignment:
| Q |
72 |
taatcaaaaccataagatgctacattactgagaatcctaacaaacctaaacttccccctggtcccaaaccattgcatatagttggtaatcttcctgaaat |
171 |
Q |
| |
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||||||||||| |||||| | || ||| || || ||||| |||| ||||||||||| ||||||||||||| || ||||||||| |||||||||||||| |
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| T |
27714470 |
taatcaaaaccttaagataccaccttaacgaaaaccctaaaaaacgcaaacttcccccaggtcccaaaccatggcctatagttggcaatcttcctgaaat |
27714371 |
T |
|
| Q |
172 |
gcttgcaaacagatctgcaactaggtgggtacacaagactatggaggaattgaacactgaaatagcatgtattcgcctaggaaatgtcaatgttatccct |
271 |
Q |
| |
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||||||||||| || ||||||||||| ||||||| | ||||| ||| ||||| |||||||||||||| ||||||||||||||| |||||||||| |
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| T |
27714370 |
gcttgcaaacaagcctacaactaggtggatacacaaaataatggaagaaaaaaacacagaaatagcatgtatccgcctaggaaatgtccatgttatcccc |
27714271 |
T |
|
| Q |
272 |
gttacttgtccctccattgccc |
293 |
Q |
| |
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||||||| |||| | ||||||| |
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| T |
27714270 |
gttacttatcccacaattgccc |
27714249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 297 - 413
Target Start/End: Original strand, 27701788 - 27701898
Alignment:
| Q |
297 |
ataatctatccttacttcgaaaaaatattccgagtgatttctcaaccttaaacaccataatactcacttatcccctttcgttggtcaaagaaaaggtccc |
396 |
Q |
| |
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||||||||||||| ||| | ||||||||| |||||| ||||| ||||||||| | ||||||||||| |||||||||| ||||||||||||||||| |
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| T |
27701788 |
ataatctatccttgcttagcaaaaatatttcgagtggtttctaaaccttaaaga------tactcacttattccctttcgttagtcaaagaaaaggtccc |
27701881 |
T |
|
| Q |
397 |
actttgttcgcacaaag |
413 |
Q |
| |
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|||| |||| ||||||| |
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| T |
27701882 |
acttcgttcacacaaag |
27701898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 125 - 259
Target Start/End: Original strand, 26408685 - 26408819
Alignment:
| Q |
125 |
ccccctggtcccaaaccattgcatatagttggtaatcttcctgaaatgcttgcaaacagatctgcaactaggtgggtacacaagactatggaggaattga |
224 |
Q |
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||||| ||||||||||||| || ||||||||||||||||||||||||| ||||||| | ||||| ||| |||| || ||| ||||| || |||| |
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| T |
26408685 |
cccccaggtcccaaaccatggcctatagttggtaatcttcctgaaatgattgcaaataatcctgcacctatgtggatattcaaagtgatggaagatttga |
26408784 |
T |
|
| Q |
225 |
acactgaaatagcatgtattcgcctaggaaatgtc |
259 |
Q |
| |
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|||| |||||||||||||| || |||||||||||| |
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|
| T |
26408785 |
acaccgaaatagcatgtatccgtctaggaaatgtc |
26408819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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