View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0160_high_1 (Length: 620)
Name: NF0160_high_1
Description: NF0160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0160_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 91 - 604
Target Start/End: Complemental strand, 13886597 - 13886091
Alignment:
| Q |
91 |
atcatagggaatgctgaaatgcatgaattgaatatgttgtgttatattgaagtgttttttgcgtctaccttttggtttgatttgatgagctgaaaaattt |
190 |
Q |
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| T |
13886597 |
atcatagggaatgctgaaatgcatgaattgaatatgttgtgttatattgaagtgttttttgcgtctaccttttggtttgatttgatgagctgaaaaattt |
13886498 |
T |
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| Q |
191 |
atgtttgtgaaaaattggttaacttttgaaatgactaagtgattgtaatttctttcccttgaattatggtttttggggactttgagaatgtttggtttgt |
290 |
Q |
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| T |
13886497 |
atgtttgtggaaaattggttaacttttgaaatgactaagtgattgtaatttctttcccttgaattatggtttttggggactttgagaatgtttggtttgt |
13886398 |
T |
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| Q |
291 |
tgagatttaagaatagagttgttggtagaatannnnnnngagtgtgaaataagattatataaatgggattacatataatttgtggcatattgatgaatag |
390 |
Q |
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| T |
13886397 |
tgagatttaagaatagagttgttgggagaatatttttttgagtgtgaaataagattatataaatgggattacatataatttgtggcatattgatgaatag |
13886298 |
T |
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| Q |
391 |
ggattaaga---gtgcctatgaggtgggtgaggttgattacctaaatagcaatgatttgtacagttttaatgtcctaattagttaagttttcatgtgatg |
487 |
Q |
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| T |
13886297 |
ggattaagagaggagcatatgaggtgggtgaggttgattacctaaatagcaatgatttgtacagttttaatgtcctaattagttaagttttc-------- |
13886206 |
T |
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| Q |
488 |
tgatgtgattgtgttcatcactattttctaattagtttaggcttctgttcatagattatatattgaatgttaaataggatatccctaccttttttgagtg |
587 |
Q |
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| T |
13886205 |
--atgtgattgtgttcatcactattttctaattagtttaggcttctgttcatatattatatattgaatgttaaataggatatccctaccttttttgagtg |
13886108 |
T |
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| Q |
588 |
ttaactttccgattttc |
604 |
Q |
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| T |
13886107 |
ttaactttccaattttc |
13886091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 322
Target Start/End: Original strand, 13898628 - 13898690
Alignment:
| Q |
260 |
tttttggggactttgagaatgtttggtttgttgagatttaagaatagagttgttggtagaata |
322 |
Q |
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| T |
13898628 |
tttttggggactttgagaatgttttgattgttgggatttgagaatagaattcttggtacaata |
13898690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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