View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0160_high_2 (Length: 360)
Name: NF0160_high_2
Description: NF0160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0160_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 7 - 357
Target Start/End: Complemental strand, 3323906 - 3323558
Alignment:
| Q |
7 |
gcagcacagacccttttaggactagatcactagacatctagagtgtgacttgattggccgatatcaggggctcattaatgttagacagggctgatactat |
106 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||| |||||| | |
|
|
| T |
3323906 |
gcagcacacccccttttaggattagatcactagacatctagagtgtgacttgattggccgatatcagggtctcattgatgttggacagggcagatacttt |
3323807 |
T |
|
| Q |
107 |
cttcaaatttgagcttactcaaccatacgtaaccgactgataagttgaaatatttcttccacttatataagtacattttcaaaccatatctcatccaatg |
206 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
3323806 |
cttcaaatttgagcttactcaaccata-gtaaccgacttataaggtgaaatatttcttccacttatataagtgcattttcaaaccatatctcatccaatg |
3323708 |
T |
|
| Q |
207 |
gatgactatggcaaacaggccaaatgtctagagatgcatatttagcaaatgaggcatatggctccgtggtagaaccagtaggaaaatgaagggcatgaat |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
3323707 |
gatgactatggcaaacaggccaaatgtctagagatacatatttagcaaatgaggtatatggctccgtggtagaaccagtagaaaaatgaaggacatgaat |
3323608 |
T |
|
| Q |
307 |
gctctacacctataatggaggatgacccatttttaagtcttagatgacaaa |
357 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3323607 |
gctctac-cctataatggaggatgacccatttttaagtcttatatgacaaa |
3323558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 205 - 291
Target Start/End: Complemental strand, 3260748 - 3260662
Alignment:
| Q |
205 |
tggatgactatggcaaacaggccaaatgtctagagatgcatatttagcaaatgaggcatatggctccgtggtagaaccagtaggaaa |
291 |
Q |
| |
|
||||| |||| | |||||||||||||||| |||||||||| || ||||||||| |||||||||| |||||||||| |||||||||| |
|
|
| T |
3260748 |
tggataactaagccaaacaggccaaatgtatagagatgcacatgcagcaaatgaagcatatggctgcgtggtagaatcagtaggaaa |
3260662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 195
Target Start/End: Complemental strand, 38368737 - 38368704
Alignment:
| Q |
162 |
cttccacttatataagtacattttcaaaccatat |
195 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |
|
|
| T |
38368737 |
cttccacttatataaatacattttcaaaccatat |
38368704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 206
Target Start/End: Original strand, 16874172 - 16874212
Alignment:
| Q |
166 |
cacttatataagtacattttcaaaccatatctcatccaatg |
206 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
16874172 |
cacttatataaacacattttcaagccatatctcatccaatg |
16874212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 587 times since January 2019
Visitors: 2233