View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0160_low_11 (Length: 249)
Name: NF0160_low_11
Description: NF0160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0160_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 17 - 127
Target Start/End: Complemental strand, 42962793 - 42962683
Alignment:
| Q |
17 |
atgaaaaccgtaaaacatgaaaacctcttcctcgattcttctttcatttcatgtggtatgtaaagttgtgtaatttataaaaggtgannnnnnnctctgg |
116 |
Q |
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| T |
42962793 |
atgaaaaccgtaaaacgtgaaaatctcttcctcgattcttctttcatttcatgtggtatgtaaagttgtgtaatttataaaaggtgatttttttctctgg |
42962694 |
T |
|
| Q |
117 |
agaaatctttt |
127 |
Q |
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| T |
42962693 |
agaaatctttt |
42962683 |
T |
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Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 47536203 - 47536289
Alignment:
| Q |
17 |
atgaaaaccgtaaaacatgaaaacctcttcctcgattcttctttcatttcatgtggtatgtaaagttgtgtaatttataaaaggtga |
103 |
Q |
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| T |
47536203 |
atgaaaaccgtaaaacgcgaaaacctcttcctcgattcttctttcatttcatgtggtatgtaaagttgtgtaatttataaaaggtga |
47536289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 103
Target Start/End: Complemental strand, 23153178 - 23153109
Alignment:
| Q |
35 |
gaaaacctcttcctcgattct-tctttcatttcatgtggtatgtaaagttgtgtaatttataaaaggtga |
103 |
Q |
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| T |
23153178 |
gaaaacctcttcctcgattccgtctttcaattcacaaggtatgtaaagttgtgtaatttataaaaggtga |
23153109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 44218382 - 44218464
Alignment:
| Q |
17 |
atgaaaaccgtaaaacatgaaaacctcttcctcgattcttctttcatttcatgtggtatgtaaagttgtgtaatttataaaag |
99 |
Q |
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| T |
44218382 |
atgaaaaccgtaaaacgcgaaaacctcttcctcgattcttctttcatttcatgtggtatgtaaagttgtgtaatttataaaag |
44218464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 127
Target Start/End: Original strand, 21569796 - 21569903
Alignment:
| Q |
20 |
aaaaccgtaaaacatgaaaacctcttcctcgattcttctttcatttcatgtggtatgtaaagttgtgtaatttataaaaggtgannnnnnnctctggaga |
119 |
Q |
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||||| ||||||| |||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
21569796 |
aaaacagtaaaacgcgaaaacctcttcctcgattcgtctttcaattcacgtggtatgtaaagttgtgtaatttataaaaggtgatttttttctctggaga |
21569895 |
T |
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| Q |
120 |
aatctttt |
127 |
Q |
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|||||||| |
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| T |
21569896 |
aatctttt |
21569903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 371535 - 371428
Alignment:
| Q |
20 |
aaaaccgtaaaacatgaaaacctcttcctcgattcttctttcatttcatgtggtatgtaaagttgtgtaatttataaaaggtgannnnnnnctctggaga |
119 |
Q |
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||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
371535 |
aaaaccgtaaaacgcgaaaacctcttcctcgatttttctttcatttcatgtggtatgtaaagttgtgtaatttataaaaggtgatttttttctctggaga |
371436 |
T |
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| Q |
120 |
aatctttt |
127 |
Q |
| |
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|||||||| |
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| T |
371435 |
aatctttt |
371428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 158 - 217
Target Start/End: Complemental strand, 370448 - 370389
Alignment:
| Q |
158 |
ttaaactgattccagaaatcattttcaaggaagaatgtcgtcagtaaaacaagatcacct |
217 |
Q |
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| T |
370448 |
ttaaactgattccagaaatcattttcaaggaagaatgtcgtcagtaaaacaagatcacct |
370389 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 103
Target Start/End: Complemental strand, 27226051 - 27226017
Alignment:
| Q |
69 |
gtggtatgtaaagttgtgtaatttataaaaggtga |
103 |
Q |
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| T |
27226051 |
gtggtatgtaaagttgtgtaattgataaaaggtga |
27226017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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