View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0160_low_4 (Length: 353)
Name: NF0160_low_4
Description: NF0160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0160_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 12 - 325
Target Start/End: Complemental strand, 5538489 - 5538176
Alignment:
| Q |
12 |
atgagatgaagagttgaatcacaagaaggtggattaaatggtttcccttattcaattagagcatcactatatgttactagatggacatgagaaccaaatt |
111 |
Q |
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| T |
5538489 |
atgagataaagagttgaatcacaagaaggtggattaaatggtttcccttattcaattagagcatcactatatgttactagatggacatgagaaccaaatt |
5538390 |
T |
|
| Q |
112 |
gttcgaaagcatgtcatagttcttgaaggtgaatcaagattgaagccnnnnnnncggacggaaaatgactccaatggcataaagcaaaaaccttacaatc |
211 |
Q |
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| T |
5538389 |
gttcgaaagcatgtcatagttcttggaggtgaatcaagattgaagccaaaaaaacggacggaaaatgattccaatggcataaagcaaaaaccttacaatc |
5538290 |
T |
|
| Q |
212 |
actatttgatttacatctatacatatattttgtttatagagggtgcatttgaaaattttcatcaccatcactcaatattttttacgagcagatgcaaatg |
311 |
Q |
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| T |
5538289 |
accatttgatttacatctatacatatattttgtttatagagggtgcatttgaaaattttcatcaccatcactcaatattttttacgagcagatgcaaatg |
5538190 |
T |
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| Q |
312 |
tggttatgttttgt |
325 |
Q |
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|||||||||||||| |
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| T |
5538189 |
tggttatgttttgt |
5538176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 95 - 311
Target Start/End: Complemental strand, 40302308 - 40302094
Alignment:
| Q |
95 |
gacatgagaaccaaattgttcgaaagcatgtcatagttcttgaaggtgaatcaagattgaagccnnnnnnncggacggaaaatgactccaatggcataaa |
194 |
Q |
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| T |
40302308 |
gacatgagaaccaaactgttcgaaagcatgtggtagttcttggaggtgaatcaaggttgaagccaaaaaagcggacggaaaatgactccaatggcataaa |
40302209 |
T |
|
| Q |
195 |
gcaaaaaccttacaatcactatttgatttacatctatacatatattttgtttatagagggtgcatttgaaaattttcatcaccatcactcaatatttttt |
294 |
Q |
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| T |
40302208 |
gcaaaaaccttataatcactgtatgatttacatctatacatatattttg-ttatagagggtgcatttgaaatttttcatcgtca-ctcttaatatttttt |
40302111 |
T |
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| Q |
295 |
acgagcagatgcaaatg |
311 |
Q |
| |
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| T |
40302110 |
acaagcagatgcaaatg |
40302094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 78 - 325
Target Start/End: Complemental strand, 25574428 - 25574182
Alignment:
| Q |
78 |
ctatatgttactagatggacatgagaaccaaattgttcgaaagcatgtcatagttcttgaaggtgaatcaagattgaagccnnnnnnncggacggaaaat |
177 |
Q |
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| T |
25574428 |
ctatatgttactaggtggacatgagaaccaaactgttcgaaagcatgtgatagttcttgaaggtgaatcaaggttgaagccaaaaaagtggatggaaaat |
25574329 |
T |
|
| Q |
178 |
gactccaatggcataaagcaaaaaccttacaatcactatttgatttacatctatacatatattttgtttatagagggtgcatttgaaaattttcatcacc |
277 |
Q |
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| T |
25574328 |
gattccaatggcataaagcaaaaaccttacaatcactatttgatttacatctatacatatattttg-ttatagagggtgcatttgaaaattttcatcacc |
25574230 |
T |
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| Q |
278 |
atcactc--aatattttttacgagcagatgcaaatgtggttatgttttgt |
325 |
Q |
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|| |||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
25574229 |
attactcttaatattttttacgagcagatgcaaa--tggttatgttttgt |
25574182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 32726548 - 32726487
Alignment:
| Q |
20 |
aagagttgaatcacaagaaggtggattaaatggtttcccttattcaattagagcatcactat |
81 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32726548 |
aagagttgaatcacaagaaggtggattaaatggtttcccttattcaattagagcatcactat |
32726487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 39331774 - 39331717
Alignment:
| Q |
20 |
aagagttgaatcacaagaaggtggattaaatggtttcccttattcaattagagcatca |
77 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
39331774 |
aagagttgaatcacaagaaggtggattaaatggtttgccttattcaattagagcatca |
39331717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 44187412 - 44187351
Alignment:
| Q |
20 |
aagagttgaatcacaagaaggtggattaaatggtttcccttattcaattagagcatcactat |
81 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44187412 |
aagagttgaatcacaagaaggtggattaaatggtttcccttattcaattagagcatcactat |
44187351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 96 - 216
Target Start/End: Complemental strand, 8048065 - 8047946
Alignment:
| Q |
96 |
acatgagaaccaaattgttcgaaagcatgtcatagttcttgaaggtgaatcaagattgaagccnnnnnnncggacggaaaatgactccaatggcataaag |
195 |
Q |
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|||||||||||||| |||| |||||||||| | ||||||| |||||||||||| |||||||| ||| || |||||||||||||||||||||| |
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| T |
8048065 |
acatgagaaccaaactgttagaaagcatgtggt-gttcttggaggtgaatcaaggttgaagccaaaaaagaggatgggaaatgactccaatggcataaag |
8047967 |
T |
|
| Q |
196 |
caaaaaccttacaatcactat |
216 |
Q |
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|||||||||| ||| ||||| |
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| T |
8047966 |
gaaaaaccttaaaattactat |
8047946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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