View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0160_low_6 (Length: 319)
Name: NF0160_low_6
Description: NF0160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0160_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 8 - 296
Target Start/End: Original strand, 12997703 - 12997990
Alignment:
| Q |
8 |
cagcagagacacgcataatccaaaaaatatatgcaatcatatgtgtcggacgccaaacataatctaatagagacacgcataatccaaaaagtatacgtgc |
107 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
12997703 |
cagcagagacacgcataatccaaaaagtatatgtaatgatatgtgtcggacgccaaacata-tctaacagagacacgcataatccaaaaagtatatgtgt |
12997801 |
T |
|
| Q |
108 |
ttcctaataacaaataaaattgaaagatagagatagaagcatcgaatcaaatattgtccaaagtatgtacttactttccccaccaaagttcattttcagt |
207 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12997802 |
ttcctaataacaaataaaattgaaagacagagatagaagcatcgaatcaaatattgtccaaagtatgtacttactttccccaccaaagttcattttcagt |
12997901 |
T |
|
| Q |
208 |
aaccttatccttaaccacacgcttgtctctaggagaacgacctgtcttggcaccagaaagtgttgccattgctccattggaagtgatga |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12997902 |
aaccttatccttaaccacacgcttgtctctaggagaacgacctgtcttggcaccagaaagtgttgccattgctccattggaagtgatga |
12997990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 8 - 296
Target Start/End: Original strand, 13072343 - 13072630
Alignment:
| Q |
8 |
cagcagagacacgcataatccaaaaaatatatgcaatcatatgtgtcggacgccaaacataatctaatagagacacgcataatccaaaaagtatacgtgc |
107 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
13072343 |
cagcagagacacgcataatccaaaaagtatatgtaatgatatgtgtcggacgccaaacata-tctaacagagacacgcataatccaaaaagtatatgtgt |
13072441 |
T |
|
| Q |
108 |
ttcctaataacaaataaaattgaaagatagagatagaagcatcgaatcaaatattgtccaaagtatgtacttactttccccaccaaagttcattttcagt |
207 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13072442 |
ttcctaataacaaataaaattgaaagacagagatagaagcatcgaatcaaatattgtccaaagtatgtacttactttccccaccaaagttcattttcagt |
13072541 |
T |
|
| Q |
208 |
aaccttatccttaaccacacgcttgtctctaggagaacgacctgtcttggcaccagaaagtgttgccattgctccattggaagtgatga |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13072542 |
aaccttatccttaaccacacgcttgtctctaggagaacgacctgtcttggcaccagaaagtgttgccattgctccattggaagtgatga |
13072630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 282
Target Start/End: Original strand, 28139031 - 28139138
Alignment:
| Q |
175 |
tacttactttccccaccaaagttcattttcagtaaccttatccttaaccacacgcttgtctctaggagaacgacctgtcttggcaccagaaagtgttgcc |
274 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||| | | |||||| || |||||||| ||||| ||| | || || |||||||| || |||||||| ||| |
|
|
| T |
28139031 |
tacttactttccccaccaaagctcattctcagtgagatcatccttgacgacacgcttatctcttggacaccgtccggtcttggcccccgaaagtgtagcc |
28139130 |
T |
|
| Q |
275 |
attgctcc |
282 |
Q |
| |
|
| |||||| |
|
|
| T |
28139131 |
aatgctcc |
28139138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 611 times since January 2019
Visitors: 2233