View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0161-INSERTION3 (Length: 344)
Name: NF0161-INSERTION3
Description: NF0161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0161-INSERTION3 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 38 - 344
Target Start/End: Complemental strand, 17848508 - 17848200
Alignment:
| Q |
38 |
agatcaaaggactgtgttcaaagtcagacagaggaatacattatacatcctcatcaaatcaaaccccgggaaaaatgtatgtaaataattcatgctcctt |
137 |
Q |
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| T |
17848508 |
agatcaaaggactgtgttcaaaatcagacagaggaaaacattatacatcctcatcaaatcaaaccccgggaaaattgtatgtaaataattcatgctcctt |
17848409 |
T |
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| Q |
138 |
ttggaatgaattata--agcaaattttaccttatactttttggaatgaaatacaagcaactattaattacatctctcctttttagtattagtatctctaa |
235 |
Q |
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| T |
17848408 |
ttggaatgaattatataagcaaattttaccttatactttttggaatgaaatacaagcaactattaactacatctctcctttttaatattagtatctctaa |
17848309 |
T |
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| Q |
236 |
gcatcccccattattatttaagtatatgttgaagattattaaagattgcatggagaaatattggatttattctctccataatactcttagtgagggcaat |
335 |
Q |
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| T |
17848308 |
gcatcccccattattatttaagtatatgttgaagattattaaagattgcatgaagaaatattggatttattctctccataatactcttagtgagggcaat |
17848209 |
T |
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| Q |
336 |
gctttacta |
344 |
Q |
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||||||||| |
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| T |
17848208 |
gctttacta |
17848200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 17848553 - 17848520
Alignment:
| Q |
8 |
acgaaatcatgcttaaattataaggagtttagat |
41 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
17848553 |
acgaaatcatgcttaaattataaggagtttagat |
17848520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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