View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0161-INSERTION4 (Length: 753)
Name: NF0161-INSERTION4
Description: NF0161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0161-INSERTION4 |
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Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 14 - 519
Target Start/End: Complemental strand, 48825929 - 48825428
Alignment:
| Q |
14 |
ataattggtattaggattgggcaacgagcaagatatcactctcaaaggtttacaagctattcatatataaatgcgacaaagtttacatggaagcttacac |
113 |
Q |
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| T |
48825929 |
ataattggt-ttaggattgggcaacgagcaagatatcactctcaaaggtttacaagctattcata----aatgcgacaaagtttacatggaagcttacac |
48825835 |
T |
|
| Q |
114 |
ttccctcctctccttcggcctctcttcaaacggcctctccaacttagaaaaactatatggtaaacccattacacttgccgatagagaaatggttgaagaa |
213 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48825834 |
ttccctcctctccttcggcctctcttcaaaaggcctctccaacttagaaaaactatatggtaaacccattacacttgccgatagagaaatggttgaagaa |
48825735 |
T |
|
| Q |
214 |
aaagttgatgttattctatctcaa---------cctcatgttgctttccttgttgttgtgtatgtatgtatgctatatcaccctccttcaacattttaat |
304 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
48825734 |
aaagttgatgttattctatctcaagctcatctttctcatgttgctttccttgttgttgtgtatgtatgtatgctatatcaccctcc--------tttaat |
48825643 |
T |
|
| Q |
305 |
tgttttgcttcagtttcttatttttg--tattcttcccagggctactactcacactgttcttgttgttcgagcaaagaaaatgggaattgaagtcaaaat |
402 |
Q |
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||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48825642 |
tgttttgcttcagtttcttatttctgtatattcttcccagggctactactcacactgttcttgttgttcgagcaaagaaaatgggaattgaagtcaaaat |
48825543 |
T |
|
| Q |
403 |
agtgcacaatgcgcatctgttttgaatgcaattgggatttgtggtttgcagctatatcgttatggggagactgtttcaataccnnnnnnnactcagacat |
502 |
Q |
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| T |
48825542 |
agtgcacaat--gcatctgttttgaatgcaattgggatttgtggtttgcagctatatcgttatggggagactgtttcaatacctttttttactcagacat |
48825445 |
T |
|
| Q |
503 |
ggagacctgatagcttc |
519 |
Q |
| |
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||| ||||||||||||| |
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| T |
48825444 |
ggaaacctgatagcttc |
48825428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 521 - 753
Target Start/End: Complemental strand, 48824855 - 48824623
Alignment:
| Q |
521 |
acaataacacaaactttatatgtatcaccttctacggtaatagaagaaatacaataagaggtcagtatttccatattcacttgtcttatttaaaactcat |
620 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48824855 |
acaataacacaaactttatatgtatcaccttctacggtaatagaagaaatacaataagaggtcagtatttccatattcacttgtcttatttaaaactcat |
48824756 |
T |
|
| Q |
621 |
tgattttatatgccatacccacatgttattttttgacaaatcatggccatattattattctgtccattaattgattttttaaccatgcatgatccctttc |
720 |
Q |
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| T |
48824755 |
tgattttatatgccatacccacatgttattttttgacaaatcatggccatattattattctgtccattaattgattttttaaccatgcatgatccctttc |
48824656 |
T |
|
| Q |
721 |
tctaccttcctgattttgcctttgtcttaaaac |
753 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
48824655 |
tctaccttcctgattttgcctttgtcttaaaac |
48824623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 2e-57; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 24 - 230
Target Start/End: Complemental strand, 53054319 - 53054117
Alignment:
| Q |
24 |
ttaggattgggcaacgagcaagatatcactctcaaaggtttacaagctattcatatataaatgcgacaaagtttacatggaagcttacacttccctcctc |
123 |
Q |
| |
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||||| |||||| | ||||||||||| || |||||||||||| |||||||||| | |||||||||| |||||||||||||||||||||||||| ||| |
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| T |
53054319 |
ttagggttgggcgatgagcaagatattacactcaaaggtttagaagctattcaaa----aatgcgacaaggtttacatggaagcttacacttcccttctc |
53054224 |
T |
|
| Q |
124 |
tccttcggcctctcttcaaacggcctctccaacttagaaaaactatatggtaaacccattacacttgccgatagagaaatggttgaagaaaaagttgatg |
223 |
Q |
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|||||||| ||||||||| |||||||||||||| | ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
53054223 |
tccttcggtctctcttcacacggcctctccaacctcgaaaaactatacggtaaacccattattcttgccgatagagaaatggttgaagaaaaagcggatg |
53054124 |
T |
|
| Q |
224 |
ttattct |
230 |
Q |
| |
|
|||||| |
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| T |
53054123 |
atattct |
53054117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 294 - 519
Target Start/End: Complemental strand, 53054015 - 53053792
Alignment:
| Q |
294 |
aacattttaattgttttgcttcagtttcttatttttgtattcttcccagggctactactcacactgttcttgttgttcgagcaaagaaaatgggaattga |
393 |
Q |
| |
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|||| ||| ||||||||||||||||| | ||||| || || ||| ||||||||| |||||||||| |||||||||||||| ||||| |||||||| || |
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| T |
53054015 |
aacaattttattgttttgcttcagttattgattttggtgtttttcacagggctaccactcacactgaccttgttgttcgagctaagaagatgggaatcga |
53053916 |
T |
|
| Q |
394 |
agtcaaaatagtgcacaatgcgcatctgttttgaatgcaattgggatttgtggtttgcagctatatcgttatggggagactgtttcaataccnnnnnnna |
493 |
Q |
| |
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||||||| | ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
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| T |
53053915 |
agtcaaagttgtgcacaatgc--atctgtcatgaatgcaattgggatttgtggtttgcagctatatcgttatggggaaactgtttcaatacctttcttta |
53053818 |
T |
|
| Q |
494 |
ctcagacatggagacctgatagcttc |
519 |
Q |
| |
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|| |||| |||||||||||||||||| |
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| T |
53053817 |
ctgagacgtggagacctgatagcttc |
53053792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 95 - 230
Target Start/End: Original strand, 53341292 - 53341427
Alignment:
| Q |
95 |
tttacatggaagcttacacttccctcctctccttcggcctctcttcaaacggcctctccaacttagaaaaactatatggtaaacccattacacttgccga |
194 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||| ||||||||| |||||||||||||| | ||||||||||| ||||||||||||||||||||||| |
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| T |
53341292 |
tttacatggaagcttacacttcccttccctccttcggtctctcttcatacggcctctccaaccttgaaaaactatacggtaaacccattacacttgccga |
53341391 |
T |
|
| Q |
195 |
tagagaaatggttgaagaaaaagttgatgttattct |
230 |
Q |
| |
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||||||||||||||||||||||| |||| |||||| |
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| T |
53341392 |
tagagaaatggttgaagaaaaagcggatgatattct |
53341427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 350 - 519
Target Start/End: Original strand, 53341596 - 53341777
Alignment:
| Q |
350 |
actcacactgttcttgttgttcgagcaaagaaaatgggaattgaagtcaaaatagtgcacaatgcgcatctgttttgaatgcaattgggatttg------ |
443 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| |||||||| ||||||||| | ||||||||| |||||||| ||||||||||||||||||| |
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| T |
53341596 |
actcacactgaccttgttgttcgagctaagaagatgggaatcgaagtcaaagttgtgcacaat--gcatctgtcatgaatgcaattgggatttgtagcta |
53341693 |
T |
|
| Q |
444 |
--------tggtttgcagctatatcgttatggggagactgtttcaataccnnnnnnnactcagacatggagacctgatagcttc |
519 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||| || |||| |||||||||||||||||| |
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|
| T |
53341694 |
tatcgttatggtttgcagctatatcgttatgggggaactgtttcaatacctttctttacggagacgtggagacctgatagcttc |
53341777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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