View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0161-INSERTION5 (Length: 767)
Name: NF0161-INSERTION5
Description: NF0161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0161-INSERTION5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 690; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 690; E-Value: 0
Query Start/End: Original strand, 8 - 767
Target Start/End: Complemental strand, 3828660 - 3827901
Alignment:
| Q |
8 |
aatataaaaatcaaccaaaaccttttcattcagattttttctatataaaattgaaagcagaatccaaatattataaaatgcacacatttatagactttgt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3828660 |
aatataaaaatcaaccaaaaccttttcattcagattttttctatataaaattgaaagcagaatccaaatattataaaatgcacacatttatagactttgt |
3828561 |
T |
|
| Q |
108 |
ataagcctccaaatatccaggttcatttgcctgacaaaaccaaannnnnnncttttatcaaacttaacatccctttatccctagaaattagaggacttac |
207 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3828560 |
ataagcctccaaatatccaggttcatttacctgacaaaaccaaatttttttcttttatcaaacttaacatccctttatccctagaaattagaggacttac |
3828461 |
T |
|
| Q |
208 |
tagaccataaaatataaatgtccaaacatcttcgtagcgtatatgtatttgtatatatatgcttagtaaaatcagaaagtcatgcattgatacacacact |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3828460 |
tagaccataaaatataaatgtccaaacatcttcgtagcgtatatgtatttgtatatatatgcttagtaaaatcagaaagtcatgcattgatacacacact |
3828361 |
T |
|
| Q |
308 |
aaaatgcattaggctaatagtcttgcataaacttcttcaatctctcagatattcttgcagcttcattaccaaattctcctacctaaacaaaacaatgcaa |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3828360 |
aaaatgcattaggctaatagtcttgcataaacttcttcaatctctcagatattcttgcagcttcattgccaaattctcctacctaaacaaaacaatgcaa |
3828261 |
T |
|
| Q |
408 |
ttagctagagttaactaattacagattggagaccctattcaaatatcattattttgaaaaaatttcatcctttgacgcaactcataccaagtagtcatat |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3828260 |
ttagctagagttaactaattacagattggagaccctattcaaatatcattattttgaaaaaatttcatcctttgacgcaactcataccaagtagtcatat |
3828161 |
T |
|
| Q |
508 |
ttttatcaataacctgtaaataacatcaataccatagaaagagccatgttgtagtcaaaaccttcaaactaatggggtattcatattctcttgaaaatgt |
607 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3828160 |
ttttatcaataacctgtaaataacatcaataccatagaaagagccattttgtagtcaaaaccttcaaattaatggggtattcatattctcttgaaaatgt |
3828061 |
T |
|
| Q |
608 |
atttttcttcgaattattcagtcgatatacaatcaaatagcaatttcattggcattatccaacacattattaaaaaccagtttctctatatcccttnnnn |
707 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3828060 |
atttttcttcgaattattcagtcgatatacaatcaaatagcaatttcattagcattatccaacagattattaaaaaccagtttctctatatcccttaaaa |
3827961 |
T |
|
| Q |
708 |
nnntgaaatcaactcctttattttatttattaaataaatagatgtcttttgatgctaata |
767 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3827960 |
aaatgaaatcaactcctttattatatttattaaataaatagatgtcttttgatgctaata |
3827901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 471 - 505
Target Start/End: Original strand, 54577080 - 54577114
Alignment:
| Q |
471 |
ttcatcctttgacgcaactcataccaagtagtcat |
505 |
Q |
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| T |
54577080 |
ttcatcctttgacgcaactcataccaagtagtcat |
54577114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 473 - 505
Target Start/End: Original strand, 47261438 - 47261470
Alignment:
| Q |
473 |
catcctttgacgcaactcataccaagtagtcat |
505 |
Q |
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| T |
47261438 |
catcctttgacgcaactcataccaagtagtcat |
47261470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 473 - 505
Target Start/End: Complemental strand, 9718719 - 9718687
Alignment:
| Q |
473 |
catcctttgacgcaactcataccaagtagtcat |
505 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
9718719 |
catcctttgacgcaactcataccaagtagtcat |
9718687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 473 - 505
Target Start/End: Complemental strand, 15928792 - 15928760
Alignment:
| Q |
473 |
catcctttgacgcaactcataccaagtagtcat |
505 |
Q |
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| T |
15928792 |
catcctttgacgcaactcataccaagtagtcat |
15928760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 476 - 508
Target Start/End: Complemental strand, 2245191 - 2245159
Alignment:
| Q |
476 |
cctttgacgcaactcataccaagtagtcatatt |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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| T |
2245191 |
cctttgacgcaactcataccaagtagtcatatt |
2245159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 471 - 505
Target Start/End: Original strand, 10430124 - 10430158
Alignment:
| Q |
471 |
ttcatcctttgacgcaactcataccaagtagtcat |
505 |
Q |
| |
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||||||||||||||||||||||||||| ||||||| |
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| T |
10430124 |
ttcatcctttgacgcaactcataccaattagtcat |
10430158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 473 - 505
Target Start/End: Original strand, 1802932 - 1802964
Alignment:
| Q |
473 |
catcctttgacgcaactcataccaagtagtcat |
505 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
1802932 |
catcctttgacgcaactcataccaagtagtcat |
1802964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 471 - 505
Target Start/End: Complemental strand, 23183299 - 23183265
Alignment:
| Q |
471 |
ttcatcctttgacgcaactcataccaagtagtcat |
505 |
Q |
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||||||||||||||||||||||||||| ||||||| |
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| T |
23183299 |
ttcatcctttgacgcaactcataccaattagtcat |
23183265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 471 - 505
Target Start/End: Complemental strand, 45473684 - 45473650
Alignment:
| Q |
471 |
ttcatcctttgacgcaactcataccaagtagtcat |
505 |
Q |
| |
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||||||||||||||||||||||||||| ||||||| |
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|
| T |
45473684 |
ttcatcctttgacgcaactcataccaattagtcat |
45473650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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