View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0161-INSERTION8 (Length: 574)
Name: NF0161-INSERTION8
Description: NF0161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0161-INSERTION8 |
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Alignment Details
Target: chr8 (Bit Score: 464; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 8 - 537
Target Start/End: Complemental strand, 42222671 - 42222143
Alignment:
| Q |
8 |
aaaagcacaatgaagttatataacaacgtggcatttagtannnnnnnaaaccagtggaggcaattaaatattaatagtctttaacggtttcggcttggtt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
42222671 |
aaaagcacaatgaagttatataacaacgtggcatttagtagggggg-aaaccagtggaggcaattaaatattaatagtctttaatggttttggcttggtt |
42222573 |
T |
|
| Q |
108 |
ttctgtatttactgtattctccccaaaacaatttaatagtaatcatttgcaccatgttttccattcactctaatcaaaacgttgcagtttatgtttgcta |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42222572 |
ttctgtatttactgtattctccccaaaacaatttaatagtaatcatttgcaccatgttttccattcactctaatcaaaacgttgcagtttatgtttgcta |
42222473 |
T |
|
| Q |
208 |
tttgcgacgagcttagaagaggcaaactgtggtatttcttagcacatatttgcagttgaatgttttgcgatcaagattttgcactgtgttgctagctcac |
307 |
Q |
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||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
42222472 |
tttgcaacgggcttagaagaggcgaactgtggtatttcttagcacatatttgcagttgaatgttttgcgatcaagattttgcactatattgctagctcac |
42222373 |
T |
|
| Q |
308 |
gctgtaggttgtgataggtgttatcaaggtcgtggtagcaacagacacagtggtcttatggtggtagggggatgttggttcaatttgagagaaggtttag |
407 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42222372 |
gctgtaggttgtgataggtgttatccaggtcgtggtagcaacagacacagtggtcttatggtggtagggggatgttggttcaatttgagagaaggtttag |
42222273 |
T |
|
| Q |
408 |
aaaaaacaagtaaataccaacccggtttgattctttacaaccaacgtttgattcaaattctattcagatgagactaattggcgttgcattattgcatggg |
507 |
Q |
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| T |
42222272 |
aaaaaacaagtaaataccaacccggtttgattctttacaaccaacgtttgattcaaattctatacagatgagattaattggcgttgcattattgcatggg |
42222173 |
T |
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| Q |
508 |
ctgacgcaccccaccaattcaagtttctaa |
537 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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|
| T |
42222172 |
ctgacgcaccccaccaattcaagtttctaa |
42222143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 490 - 526
Target Start/End: Complemental strand, 42872458 - 42872422
Alignment:
| Q |
490 |
gttgcattattgcatgggctgacgcaccccaccaatt |
526 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||| |
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| T |
42872458 |
gttgcactattgcatgggctgacgcaccccaccaatt |
42872422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 532
Target Start/End: Original strand, 8992298 - 8992340
Alignment:
| Q |
490 |
gttgcattattgcatgggctgacgcaccccaccaattcaagtt |
532 |
Q |
| |
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|||||| |||||||||||||| |||||||| |||||||||||| |
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| T |
8992298 |
gttgcactattgcatgggctggcgcacccctccaattcaagtt |
8992340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 488 - 532
Target Start/End: Original strand, 8973476 - 8973520
Alignment:
| Q |
488 |
gcgttgcattattgcatgggctgacgcaccccaccaattcaagtt |
532 |
Q |
| |
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|||||||| ||||||||| |||| ||| ||||||||||||||||| |
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|
| T |
8973476 |
gcgttgcactattgcatgagctggcgcgccccaccaattcaagtt |
8973520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 490 - 526
Target Start/End: Complemental strand, 11652334 - 11652298
Alignment:
| Q |
490 |
gttgcattattgcatgggctgacgcaccccaccaatt |
526 |
Q |
| |
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|||||| |||||||||||||| ||||||||||||||| |
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|
| T |
11652334 |
gttgcactattgcatgggctggcgcaccccaccaatt |
11652298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 488 - 528
Target Start/End: Complemental strand, 26984612 - 26984572
Alignment:
| Q |
488 |
gcgttgcattattgcatgggctgacgcaccccaccaattca |
528 |
Q |
| |
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|||||||| |||||||||||||| |||| |||||||||||| |
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| T |
26984612 |
gcgttgcactattgcatgggctggcgcatcccaccaattca |
26984572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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