View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0161-INSERTION9 (Length: 739)
Name: NF0161-INSERTION9
Description: NF0161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0161-INSERTION9 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 639; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 639; E-Value: 0
Query Start/End: Original strand, 8 - 739
Target Start/End: Original strand, 28224704 - 28225435
Alignment:
| Q |
8 |
agattcagaataaataatggagagattagaaaccattcaatttcaaatcaatgacaagtgtctaaatagttaacgaaaactttcaaataacctggacaca |
107 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
28224704 |
agattcagaataaataa--gagagattagaaaccattcaatttcaaatcaatgagaagtgtccaaatagttaacgaaaactttcaaataacctggacata |
28224801 |
T |
|
| Q |
108 |
gactgataataggatatctcttcatctaaaagcattttcatttttcataaaggaaacataccaagaagcnnnnnnnnnnntacttgttttaattcaatgc |
207 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
28224802 |
gactgataataggatatcttttcatctaaaagcattttcatttttcataaaggaaacataccaagaagcaaaaaaaaaaatacttgttttaattcaatgc |
28224901 |
T |
|
| Q |
208 |
aaaagtagctatggcaaagtcttgtgatttgcaaatcaaaattaatggtcaacagatattccttttgaaagaggtatgcattagtcttcttcattgattc |
307 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28224902 |
aaaagtagatatggcaaagtcttgtgatttgcaaatcaaaattaatggtcaacagatattccttttgaaagaggtatgcattagtcttcttcattgattc |
28225001 |
T |
|
| Q |
308 |
tttgtggtataatat--agttattatgtacatgatcttatgtgtgagttgattctagctagttcatttattttgcagaagattatatcaaaatattgtgg |
405 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28225002 |
tttgtagtataatatatagttattatgtacatgatcttatgtgtgagttgattctagcttgttcatttattttgcagaagattatatcaaaatattgtgg |
28225101 |
T |
|
| Q |
406 |
aaaggtgaagaaaatcttgaatcatcaaaagagaagatgtcgtgtgaaggagatgggaattaggatcaatgatttccctggaggctcagatggatttgag |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28225102 |
aaaggtgaagaaaatcttgaatcatcaaaagagaagatctcatgtgaaggagatgggaattaggatcaatgatttccctggaggctcagatggatttgag |
28225201 |
T |
|
| Q |
506 |
caagtttcaaggttttgttacagcaatggcaaaatatcaattactatagacaatgtatctcttctccattgttgtgcaatttatcttggaatgactgagg |
605 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
28225202 |
caagtttcaaggttttgttacagcaatggcaaaatatcaattactatagacaatgtatctcttctccattgctgtgcaatttatcttggaatgactgagg |
28225301 |
T |
|
| Q |
606 |
aagtcttcaacaataatcttttgcaacaaacagaaacttttcttaagggaatccattactggaaatggaatgacatacttgtaagtctaatgagttgtca |
705 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28225302 |
aagtcttcaacaataatcttttgcaacaaacagaaacttttcttaagggaatccattactggaaatggaatgacatacttgtaagtctaatgagttgtca |
28225401 |
T |
|
| Q |
706 |
aatgttttatgaatatgcagattgctatggtcta |
739 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
28225402 |
aatgttttatgaatatgcagattgctatggtcta |
28225435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 363 - 420
Target Start/End: Complemental strand, 13041564 - 13041507
Alignment:
| Q |
363 |
ctagttcatttattttgcagaagattatatcaaaatattgtggaaaggtgaagaaaat |
420 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||||| |||||||||| |
|
|
| T |
13041564 |
ctagttcatttattttgcagaagttgatatcaaaatattgtggaaaattgaagaaaat |
13041507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 470 - 693
Target Start/End: Complemental strand, 13041478 - 13041255
Alignment:
| Q |
470 |
atcaatgatttccctggaggctcagatggatttgagcaagtttcaaggttttgttacagcaatggcaaaatatcaattactatagacaatgtatctcttc |
569 |
Q |
| |
|
||||||||||| |||||||| ||| ||||||||||| || || | |||||||||| |||||||||||| | |||| | | |||||| | | | |
|
|
| T |
13041478 |
atcaatgattttcctggaggatcatatggatttgagttagctttgaaattttgttacaacaatggcaaaatcaccattaatgcatccaatgttcttatcc |
13041379 |
T |
|
| Q |
570 |
tccattgttgtgcaatttatcttggaatgactgaggaagtcttcaacaataatcttttgcaacaaacagaaacttttcttaagggaatccattactggaa |
669 |
Q |
| |
|
| ||||||||||| |||||||| ||||| ||| ||||| | | ||| ||||| |||||||||||| |||| |||||| | |||||| || | ||||| |
|
|
| T |
13041378 |
ttcattgttgtgctcattatcttgaaatgagtgaagaagtttgtagcaacaatctcttgcaacaaacacaaacatttcttgatggaatctatgattggaa |
13041279 |
T |
|
| Q |
670 |
atggaatgacatacttgtaagtct |
693 |
Q |
| |
|
||||||||| ||| | |||||||| |
|
|
| T |
13041278 |
atggaatgaaataatagtaagtct |
13041255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 475 times since January 2019
Visitors: 2226