View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0161_low_1 (Length: 475)

Name: NF0161_low_1
Description: NF0161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0161_low_1
NF0161_low_1
[»] chr8 (3 HSPs)
chr8 (31-229)||(6495095-6495297)
chr8 (381-469)||(14935680-14935768)
chr8 (323-379)||(6494990-6495048)
[»] chr4 (3 HSPs)
chr4 (381-469)||(1062025-1062113)
chr4 (381-447)||(31606015-31606081)
chr4 (381-447)||(31954085-31954151)
[»] chr5 (2 HSPs)
chr5 (385-469)||(34024300-34024384)
chr5 (381-447)||(12633055-12633121)
[»] chr6 (4 HSPs)
chr6 (387-469)||(34977280-34977362)
chr6 (381-447)||(26125103-26125170)
chr6 (381-447)||(25571870-25571937)
chr6 (381-447)||(26006338-26006405)
[»] chr1 (2 HSPs)
chr1 (381-464)||(20087557-20087640)
chr1 (381-447)||(45291677-45291743)
[»] chr2 (1 HSPs)
chr2 (381-447)||(23362923-23362990)


Alignment Details
Target: chr8 (Bit Score: 102; Significance: 2e-50; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 31 - 229
Target Start/End: Complemental strand, 6495297 - 6495095
Alignment:
Q  31 atacttcctcccttccttt-ataagcacttgttgcatatttcactttttaggaagattggttgtgta---attagtttatacaatatactttttgtgt-a 125  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||   |||||| |||| |||||| ||| ||||| |    
T  6495297 atacttcctcccttgcttttataagcacttgttgcatatttcactttttaggaagattggttgtgtagtaattagtatatataatatattttgtgtgtta 6495198  T
Q  126 actattatttataaaattacttttctgtacacatgactgattcaataatttttaaaagcaagtgacgtttaaagcaatgttgaatatacgagcctcttca 225  Q
    ||||||||| ||||| |||||||| | |||||| ||||||| |||||||||||||||| || | |||||||||| ||||||||||||| ||||||||||     
T  6495197 actattattaataaa-ttacttttgtatacacacgactgatccaataatttttaaaagtaaatcacgtttaaagtaatgttgaatatatgagcctcttcg 6495099  T
Q  226 gttt 229  Q
    ||||    
T  6495098 gttt 6495095  T

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Target: chr8; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 381 - 469
Target Start/End: Original strand, 14935680 - 14935768
Alignment:
Q  381 atcttaataatatacaaatgggaagaaacaaatagtaaaaaattttgcaccaatccaatgtgtcaaatcctcaagccccttcatctcac 469  Q
    ||||||||||||||||||||||||||||||||| | |||||| |||| |||||||||||||||||||||||||||||||||||| ||||    
T  14935680 atcttaataatatacaaatgggaagaaacaaatggcaaaaaaatttgtaccaatccaatgtgtcaaatcctcaagccccttcatgtcac 14935768  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 379
Target Start/End: Complemental strand, 6495048 - 6494990
Alignment:
Q  323 agttatttctcgaaaccttaaaaacacaaaaa--tattattcaagagtgatctctcgaa 379  Q
    ||||||||||| ||||||| |||||| |||||  |||||||| ||||||||||||||||    
T  6495048 agttatttctcaaaacctttaaaacataaaaaaatattattcgagagtgatctctcgaa 6494990  T

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Target: chr4 (Bit Score: 81; Significance: 6e-38; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 381 - 469
Target Start/End: Complemental strand, 1062113 - 1062025
Alignment:
Q  381 atcttaataatatacaaatgggaagaaacaaatagtaaaaaattttgcaccaatccaatgtgtcaaatcctcaagccccttcatctcac 469  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1062113 atcttaataatatacaaatgggaagaaacaaatagcaaaaaattttgcaccaatccaatgtgtcaaatcctcaagccccttcatgtcac 1062025  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 447
Target Start/End: Original strand, 31606015 - 31606081
Alignment:
Q  381 atcttaataatatacaaatgggaagaaacaaatagtaaaaaattttgcaccaatccaatgtgtcaaa 447  Q
    |||||||||||||||||||| ||| | | |||||| |||||| |||||  |||||||||||||||||    
T  31606015 atcttaataatatacaaatgtgaaaacataaatagaaaaaaaatttgcttcaatccaatgtgtcaaa 31606081  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 447
Target Start/End: Complemental strand, 31954151 - 31954085
Alignment:
Q  381 atcttaataatatacaaatgggaagaaacaaatagtaaaaaattttgcaccaatccaatgtgtcaaa 447  Q
    |||||||||||||||||||| ||||  |||||||| |||   |||||||||| |||||| |||||||    
T  31954151 atcttaataatatacaaatgtgaagccacaaataggaaatttttttgcaccagtccaatatgtcaaa 31954085  T

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Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 385 - 469
Target Start/End: Original strand, 34024300 - 34024384
Alignment:
Q  385 taataatatacaaatgggaagaaacaaatagtaaaaaattttgcaccaatccaatgtgtcaaatcctcaagccccttcatctcac 469  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34024300 taataatatacaaatgggaagaaacaaatagcaaaaaattttgcaccaatccaatgtgtcaaatcctcaagccccttcatgtcac 34024384  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 381 - 447
Target Start/End: Complemental strand, 12633121 - 12633055
Alignment:
Q  381 atcttaataatatacaaatgggaagaaacaaatagtaaaaaattttgcaccaatccaatgtgtcaaa 447  Q
    |||||||||||||||||||| ||||| |||||||| |||||| |||||  ||||| |||||||||||    
T  12633121 atcttaataatatacaaatgtgaagacacaaataggaaaaaaatttgcttcaatctaatgtgtcaaa 12633055  T

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Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 387 - 469
Target Start/End: Original strand, 34977280 - 34977362
Alignment:
Q  387 ataatatacaaatgggaagaaacaaatagtaaaaaattttgcaccaatccaatgtgtcaaatcctcaagccccttcatctcac 469  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34977280 ataatatacaaatgggaagaaacaaatagcaaaaaattttgcaccaatccaatgtgtcaaatcctcaagccccttcatgtcac 34977362  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 381 - 447
Target Start/End: Original strand, 26125103 - 26125170
Alignment:
Q  381 atcttaataatatacaaatgggaagaaacaaatagtaaaa-aattttgcaccaatccaatgtgtcaaa 447  Q
    |||||||||||||||||||| ||||  |||||||| |||| |||||||| ||||||||||||||||||    
T  26125103 atcttaataatatacaaatgtgaagctacaaataggaaaaaaattttgccccaatccaatgtgtcaaa 26125170  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 381 - 447
Target Start/End: Original strand, 25571870 - 25571937
Alignment:
Q  381 atcttaataatatacaaatgggaagaaacaaata-gtaaaaaattttgcaccaatccaatgtgtcaaa 447  Q
    |||||||||||||||||||| ||||  ||||||| | |||||| ||||| ||||||||||||||||||    
T  25571870 atcttaataatatacaaatgtgaagctacaaataggaaaaaaaatttgccccaatccaatgtgtcaaa 25571937  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 381 - 447
Target Start/End: Original strand, 26006338 - 26006405
Alignment:
Q  381 atcttaataatatacaaatgggaagaaacaaata-gtaaaaaattttgcaccaatccaatgtgtcaaa 447  Q
    |||||||||||||||||||| ||||  ||||||| | |||||| ||||| ||||||||||||||||||    
T  26006338 atcttaataatatacaaatgtgaagctacaaataggaaaaaaaatttgccccaatccaatgtgtcaaa 26006405  T

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Target: chr1 (Bit Score: 64; Significance: 9e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 381 - 464
Target Start/End: Original strand, 20087557 - 20087640
Alignment:
Q  381 atcttaataatatacaaatgggaagaaacaaatagtaaaaaattttgcaccaatccaatgtgtcaaatcctcaagccccttcat 464  Q
    |||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||| ||||||||||| ||||||    
T  20087557 atcttaataatatacaaatgtgaagaaacaaataggaaaaaaatttgcaccaatccaatgtgtcacatcctcaagcctcttcat 20087640  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 381 - 447
Target Start/End: Complemental strand, 45291743 - 45291677
Alignment:
Q  381 atcttaataatatacaaatgggaagaaacaaatagtaaaaaattttgcaccaatccaatgtgtcaaa 447  Q
    |||||||||||||||||||| ||||| |||||||| ||||||| ||||  |||||||||||||||||    
T  45291743 atcttaataatatacaaatgtgaagacacaaataggaaaaaatattgcttcaatccaatgtgtcaaa 45291677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 381 - 447
Target Start/End: Original strand, 23362923 - 23362990
Alignment:
Q  381 atcttaataatatacaaatgggaagaaacaaata-gtaaaaaattttgcaccaatccaatgtgtcaaa 447  Q
    ||||||||||||||||||||  |||| ||||||| | ||||||  |||||||||||||||||||||||    
T  23362923 atcttaataatatacaaatgtaaagacacaaataggaaaaaaaaattgcaccaatccaatgtgtcaaa 23362990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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