View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0161_low_2 (Length: 390)

Name: NF0161_low_2
Description: NF0161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0161_low_2
NF0161_low_2
[»] chr3 (4 HSPs)
chr3 (52-370)||(25748310-25748630)
chr3 (116-289)||(1200868-1201037)
chr3 (284-369)||(1200752-1200837)
chr3 (79-118)||(25924162-25924201)
[»] chr6 (6 HSPs)
chr6 (62-289)||(32688644-32688865)
chr6 (116-289)||(19811761-19811930)
chr6 (116-289)||(22520828-22521000)
chr6 (284-369)||(19811645-19811730)
chr6 (284-369)||(22520712-22520797)
chr6 (284-369)||(32688528-32688613)
[»] chr2 (2 HSPs)
chr2 (62-289)||(25206864-25207085)
chr2 (290-369)||(25207122-25207201)
[»] chr8 (2 HSPs)
chr8 (284-369)||(18296833-18296918)
chr8 (172-290)||(18296948-18297063)
[»] chr4 (2 HSPs)
chr4 (284-374)||(47852263-47852353)
chr4 (172-288)||(47852385-47852498)


Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 52 - 370
Target Start/End: Original strand, 25748310 - 25748630
Alignment:
Q  52 ctacgcatgatttactttcttcctcaaggtgaggtatatggtgtaggactgttggttataatagttt-aacaatttatatttgcttttttcttcttctca 150  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||    
T  25748310 ctacgcatgatttactttcttcctcagggtgaggtatatggtgtaggactgttggttataatagttttaacaatttatatttgccttcttcttcttctca 25748409  T
Q  151 gggtcgtgaaaa-gacacatcaggtgcttaacaatgccaagtgaataatagacttgaaatcagcattacctccagatgttgctgctactatggggtggtt 249  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  25748410 gggtcgtgaaaaagacacattaggtgcttaacaatgccaagtgaataatagacttgaaatcagcattacctccagatgttgctgctgctatagggtggtt 25748509  T
Q  250 ccgaaatgtcatcaagccatctagtttttacccgctcttgattgctttctcagagaggtggcactcaggaacgagtagttttcaccttcctgtaggtgaa 349  Q
    ||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25748510 ccggaatgtcatcaagccatctagtctttacccgctcttgattgctttcttagagaggtggcactcaggaacgagtagttttcaccttcctgtaggtgaa 25748609  T
Q  350 atgacaatcacattggatgat 370  Q
    ||||||||||| |||||||||    
T  25748610 atgacaatcaccttggatgat 25748630  T

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Target: chr3; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 116 - 289
Target Start/End: Complemental strand, 1201037 - 1200868
Alignment:
Q  116 tttaacaatttatatttgcttttttcttcttctca-gggtcgtgaaaagacacatcaggtgcttaacaatgccaagtgaataatagacttgaaatcagca 214  Q
    |||||||||||||||||| |||||| ||  ||||| ||| |||||||| |||| || ||||||||||||||||||| |||||||||||||||||||||||    
T  1201037 tttaacaatttatatttggttttttttt--tctcaagggccgtgaaaacacacctcgggtgcttaacaatgccaagcgaataatagacttgaaatcagca 1200940  T
Q  215 ttacctccagatgttgctgctactatggggtggttccgaaatgtcatcaagccatctagtttttacccgctcttg 289  Q
    ||||||||||||||   |||| |||||||||||||| | |||||||| ||| ||||| || ||||||||||||||    
T  1200939 ttacctccagatgt---tgcttctatggggtggttctggaatgtcataaaggcatctggtctttacccgctcttg 1200868  T

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Target: chr3; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 284 - 369
Target Start/End: Complemental strand, 1200837 - 1200752
Alignment:
Q  284 ctcttgattgctttctcagagaggtggcactcaggaacgagtagttttcaccttcctgtaggtgaaatgacaatcacattggatga 369  Q
    ||||||||||||||||||||||||||||||||||  || ||||||||||| |||||||||||||||||||||||||| ||||||||    
T  1200837 ctcttgattgctttctcagagaggtggcactcagagacaagtagttttcatcttcctgtaggtgaaatgacaatcaccttggatga 1200752  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 79 - 118
Target Start/End: Complemental strand, 25924201 - 25924162
Alignment:
Q  79 ggtgaggtatatggtgtaggactgttggttataatagttt 118  Q
    |||||||||||||||||| ||||||| |||||||||||||    
T  25924201 ggtgaggtatatggtgtaagactgttagttataatagttt 25924162  T

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Target: chr6 (Bit Score: 114; Significance: 1e-57; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 62 - 289
Target Start/End: Complemental strand, 32688865 - 32688644
Alignment:
Q  62 tttactttcttcctcaaggtgaggtatatggtgtaggactgttggttataatagttt-aacaatttatatttgcttttttcttcttctcagggtcgtgaa 160  Q
    ||||||||||| |||| |||||||||| | || |||||||||||||||||||||||| |||||||||||||||||||||| ||||    |||| ||||||    
T  32688865 tttactttcttgctcagggtgaggtatgttgtttaggactgttggttataatagttttaacaatttatatttgctttttttttct----agggccgtgaa 32688770  T
Q  161 aagacacatcaggtgcttaacaatgccaagtgaataatagacttgaaatcagcattacctccagatgttgctgctactatggggtggttccgaaatgtca 260  Q
    || |||| || |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||   ||||||| |||||| | |||||||    
T  32688769 aacacacctcgggtgcttaacaatggcaagcgaataatagacttgaaatcagcattacctccagatgttgctg---ctatgggatggttctggaatgtca 32688673  T
Q  261 tcaagccatctagtttttacccgctcttg 289  Q
    ||| | ||||| || ||||||||||||||    
T  32688672 tcagggcatctggtctttacccgctcttg 32688644  T

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Target: chr6; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 116 - 289
Target Start/End: Complemental strand, 19811930 - 19811761
Alignment:
Q  116 tttaacaatttatatttgcttttttcttcttctcagggtcgtgaaaagacacatcaggtgcttaacaatgccaagtgaataatagacttgaaatcagcat 215  Q
    |||||||||||||||||| |||||| || |||||||||||||||||| |||| || ||||||||||||||||||| ||||||||||||||||||||||||    
T  19811930 tttaacaatttatatttggttttttttt-ttctcagggtcgtgaaaacacacctcgggtgcttaacaatgccaagcgaataatagacttgaaatcagcat 19811832  T
Q  216 tacctccagatgttgctgctactatggggtggttccgaaatgtcatcaagccatctagtttttacccgctcttg 289  Q
    ||||||||||||||||||   |||||||||||||| | |||||||| | | ||||| || |||||| |||||||    
T  19811831 tacctccagatgttgctg---ctatggggtggttctggaatgtcataagggcatctggtctttacctgctcttg 19811761  T

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Target: chr6; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 116 - 289
Target Start/End: Complemental strand, 22521000 - 22520828
Alignment:
Q  116 tttaacaatttatatttgcttttttcttctt--ctcagggtcgtgaaaagacacatcaggtgcttaacaatgccaagtgaataatagacttgaaatcagc 213  Q
    |||||||||||||||||| |||||| || ||  |||| || |||||||| |||| |||||||||||||||||||||| ||||| ||||||||||||||||    
T  22521000 tttaacaatttatatttggttttttttttttttctcaaggccgtgaaaacacacctcaggtgcttaacaatgccaagcgaatattagacttgaaatcagc 22520901  T
Q  214 attacctccagatgttgctgctactatggggtggttccgaaatgtcatcaagccatctagtttttacccgctcttg 289  Q
    ||||| |||| |||||||||   |||||||||||||| | |||||||||| | ||||| || ||||||||||||||    
T  22520900 attacttccaaatgttgctg---ctatggggtggttctggaatgtcatcagggcatctggtctttacccgctcttg 22520828  T

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Target: chr6; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 284 - 369
Target Start/End: Complemental strand, 19811730 - 19811645
Alignment:
Q  284 ctcttgattgctttctcagagaggtggcactcaggaacgagtagttttcaccttcctgtaggtgaaatgacaatcacattggatga 369  Q
    ||||||||||||||||||||||||||||||||||  || ||||||||||| |||||||||||||||||||||||||| ||||||||    
T  19811730 ctcttgattgctttctcagagaggtggcactcagagacaagtagttttcatcttcctgtaggtgaaatgacaatcaccttggatga 19811645  T

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Target: chr6; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 284 - 369
Target Start/End: Complemental strand, 22520797 - 22520712
Alignment:
Q  284 ctcttgattgctttctcagagaggtggcactcaggaacgagtagttttcaccttcctgtaggtgaaatgacaatcacattggatga 369  Q
    |||||||||||||||| |||||||||||||||||  || ||||||||||| |||||||||||||||||||||||||||||||||||    
T  22520797 ctcttgattgctttcttagagaggtggcactcagagacaagtagttttcatcttcctgtaggtgaaatgacaatcacattggatga 22520712  T

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Target: chr6; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 284 - 369
Target Start/End: Complemental strand, 32688613 - 32688528
Alignment:
Q  284 ctcttgattgctttctcagagaggtggcactcaggaacgagtagttttcaccttcctgtaggtgaaatgacaatcacattggatga 369  Q
    ||||||||||||||||||  ||||||||||||||  ||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  32688613 ctcttgattgctttctcattgaggtggcactcagagacgagtagttttcaccttcctgtaggtgaaatgacaatcgccttggatga 32688528  T

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Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 62 - 289
Target Start/End: Original strand, 25206864 - 25207085
Alignment:
Q  62 tttactttcttcctcaaggtgaggtatatggtgtaggactgttggttataatagttt-aacaatttatatttgcttttttcttcttctcagggtcgtgaa 160  Q
    |||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||  |||||||||  |||||||| ||||||    
T  25206864 tttaatttcttcctcagggtgaggtatatggtgtaagactgttggttataatagttttaacaatttatattt--ttttttctt--tctcagggacgtgaa 25206959  T
Q  161 aagacacatcaggtgcttaacaatgccaagtgaataatagacttgaaatcagcattacctccagatgttgctgctactatggggtggttccgaaatgtca 260  Q
    || |||| |  |||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||   ||||| | |||||||||||   |||||||    
T  25206960 aacacaccttgggtgcttaacaatgccaagcaaataatagacttggaatcagcattacctccagatgt---tgctattgtggggtggttctagaatgtca 25207056  T
Q  261 tcaagccatctagtttttacccgctcttg 289  Q
    ||| | ||||| || ||||||||||||||    
T  25207057 tcagggcatctggtgtttacccgctcttg 25207085  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 290 - 369
Target Start/End: Original strand, 25207122 - 25207201
Alignment:
Q  290 attgctttctcagagaggtggcactcaggaacgagtagttttcaccttcctgtaggtgaaatgacaatcacattggatga 369  Q
    |||||||||| ||| |||||||||||||  |||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  25207122 attgctttcttagataggtggcactcagagacgagtagttttcaccttcctgtaggtgaaatgaaaatcaccttggatga 25207201  T

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Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 284 - 369
Target Start/End: Complemental strand, 18296918 - 18296833
Alignment:
Q  284 ctcttgattgctttctcagagaggtggcactcaggaacgagtagttttcaccttcctgtaggtgaaatgacaatcacattggatga 369  Q
    ||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||| ||||| ||||||||    
T  18296918 ctcttgattgctttctcagagaggtggcactcagagacgagcagttttcaccttcctgtaggtgaaatgactatcaccttggatga 18296833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 172 - 290
Target Start/End: Complemental strand, 18297063 - 18296948
Alignment:
Q  172 ggtgcttaacaatgccaagtgaataatagacttgaaatcagcattacctccagatgttgctgctactatggggtggttccgaaatgtcatcaagccatct 271  Q
    ||||||||||||||||||| |||||||||||||||||  | || ||||||| || |||| ||    ||||||||||||  | ||||| |||| | |||||    
T  18297063 ggtgcttaacaatgccaagcgaataatagacttgaaagaatcactacctccggaggttgatg---atatggggtggttttggaatgtaatcagggcatct 18296967  T
Q  272 agtttttacccgctcttga 290  Q
    ||| |||||||||||||||    
T  18296966 agtctttacccgctcttga 18296948  T

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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 284 - 374
Target Start/End: Complemental strand, 47852353 - 47852263
Alignment:
Q  284 ctcttgattgctttctcagagaggtggcactcaggaacgagtagttttcaccttcctgtaggtgaaatgacaatcacattggatgatgtcc 374  Q
    |||||||||||||||||||| ||||||||||  |  ||||| ||||||||||||||||||||||||||||| ||||| |||||||| ||||    
T  47852353 ctcttgattgctttctcagataggtggcacttggagacgagcagttttcaccttcctgtaggtgaaatgactatcaccttggatgacgtcc 47852263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 172 - 288
Target Start/End: Complemental strand, 47852498 - 47852385
Alignment:
Q  172 ggtgcttaacaatgccaagtgaataatagacttgaaatcagcattacctccagatgttgctgctactatggggtggttccgaaatgtcatcaagccatct 271  Q
    ||||||||||||||||||| |||||||||||||||||  ||||||||||||||| |||| ||    ||||||||||||  | ||||| |||| | |||||    
T  47852498 ggtgcttaacaatgccaagcgaataatagacttgaaagaagcattacctccagaggttgatg---atatggggtggttttggaatgtaatcagggcatct 47852402  T
Q  272 agtttttacccgctctt 288  Q
     || |||||||||||||    
T  47852401 ggtctttacccgctctt 47852385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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