View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0162_high_4 (Length: 234)

Name: NF0162_high_4
Description: NF0162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0162_high_4
NF0162_high_4
[»] scaffold0259 (1 HSPs)
scaffold0259 (89-230)||(12234-12375)
[»] chr6 (2 HSPs)
chr6 (89-230)||(12587589-12587728)
chr6 (123-158)||(28865831-28865866)
[»] scaffold0150 (1 HSPs)
scaffold0150 (126-230)||(39117-39221)
[»] chr4 (1 HSPs)
chr4 (123-230)||(53595891-53595998)
[»] chr3 (1 HSPs)
chr3 (123-230)||(53227926-53228033)
[»] chr8 (2 HSPs)
chr8 (89-230)||(16906183-16906323)
chr8 (123-158)||(22594552-22594587)
[»] chr1 (2 HSPs)
chr1 (131-230)||(38658602-38658704)
chr1 (123-158)||(16659694-16659729)
[»] chr5 (4 HSPs)
chr5 (89-158)||(14347598-14347666)
chr5 (123-158)||(28905247-28905282)
chr5 (123-158)||(28941642-28941677)
chr5 (89-158)||(30645517-30645585)
[»] chr7 (1 HSPs)
chr7 (123-158)||(42754150-42754185)


Alignment Details
Target: scaffold0259 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 89 - 230
Target Start/End: Original strand, 12234 - 12375
Alignment:
Q  89 catcatcaacaacacaccaacccaagnnnnnnnntctttttcaatctttaccaatttagaacccaaaatcattcaatctctaatctcatatatcaacttt 188  Q
    ||||||||||||||||||||||||          || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12234 catcatcaacaacacaccaacccagaaaaaaaaatccttttcaatctttaccaatttagaacccaaaatcattcaatctctaatctcatatatcaacttt 12333  T
Q  189 aattcccagaaaaatatgctaaattaaattgttgaaaggaaa 230  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  12334 aattcccagaaaaagatgctaaattaaattgttgaaaggaaa 12375  T

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Target: chr6 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 89 - 230
Target Start/End: Complemental strand, 12587728 - 12587589
Alignment:
Q  89 catcatcaacaacacaccaacccaagnnnnnnnntctttttcaatctttaccaatttagaacccaaaatcattcaatctctaatctcatatatcaacttt 188  Q
    |||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12587728 catcatcaacaacacaccaacccaa--aaaaaaatctttttcaatctttaccaatttagaacccaaaatcattcaatctctaatctcatatatcaacttt 12587631  T
Q  189 aattcccagaaaaatatgctaaattaaattgttgaaaggaaa 230  Q
    |||||||||||||| ||||||||||||||||||||| |||||    
T  12587630 aattcccagaaaaagatgctaaattaaattgttgaagggaaa 12587589  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 158
Target Start/End: Original strand, 28865831 - 28865866
Alignment:
Q  123 tctttttcaatctttaccaatttagaacccaaaatc 158  Q
    ||||||||||||||||||||||||||||||||||||    
T  28865831 tctttttcaatctttaccaatttagaacccaaaatc 28865866  T

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Target: scaffold0150 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 126 - 230
Target Start/End: Original strand, 39117 - 39221
Alignment:
Q  126 ttttcaatctttaccaatttagaacccaaaatcattcaatctctaatctcatatatcaactttaattcccagaaaaatatgctaaattaaattgttgaaa 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  39117 ttttcaatctttaccaatttagaacccaaaatcattcaatctctaatctcatatatcaactttaattcccagaaaaagatgctaaattaaattgttgaaa 39216  T
Q  226 ggaaa 230  Q
    |||||    
T  39217 ggaaa 39221  T

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Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 123 - 230
Target Start/End: Complemental strand, 53595998 - 53595891
Alignment:
Q  123 tctttttcaatctttaccaatttagaacccaaaatcattcaatctctaatctcatatatcaactttaattcccagaaaaatatgctaaattaaattgttg 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  53595998 tctttttcaatctttaccaatttagaacccaaaatcattcaatctctaatctcatatattaactttaattcccagaaaaagatgctaaattaaattgttg 53595899  T
Q  223 aaaggaaa 230  Q
    ||||||||    
T  53595898 aaaggaaa 53595891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 123 - 230
Target Start/End: Complemental strand, 53228033 - 53227926
Alignment:
Q  123 tctttttcaatctttaccaatttagaacccaaaatcattcaatctctaatctcatatatcaactttaattcccagaaaaatatgctaaattaaattgttg 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  53228033 tctttttcaatctttaccaatttagaacccaaaatcattcaatctctaatctcatatatcaactttaatttccagaaaaagatgctaaattaaattgttg 53227934  T
Q  223 aaaggaaa 230  Q
    ||||||||    
T  53227933 aaaggaaa 53227926  T

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Target: chr8 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 89 - 230
Target Start/End: Complemental strand, 16906323 - 16906183
Alignment:
Q  89 catcatcaacaacacaccaacccaagnnnnnnnntctttttcaatctttaccaatttagaacccaaaatcattcaatctctaatctcatatatcaacttt 188  Q
    |||||||||||||||||||||||| |        ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  16906323 catcatcaacaacacaccaaccca-gaaaaaaaatctttttcaatctttaccaatttagaaccaaaaatcattcaatctctaatctcatatatcaacttt 16906225  T
Q  189 aattcccagaaaaatatgctaaattaaattgttgaaaggaaa 230  Q
    |||||||| ||||| |||||||||||||||||||||| ||||    
T  16906224 aattcccaaaaaaaaatgctaaattaaattgttgaaaagaaa 16906183  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 158
Target Start/End: Original strand, 22594552 - 22594587
Alignment:
Q  123 tctttttcaatctttaccaatttagaacccaaaatc 158  Q
    ||||||||||||||||||||||||||||||||||||    
T  22594552 tctttttcaatctttaccaatttagaacccaaaatc 22594587  T

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Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 131 - 230
Target Start/End: Complemental strand, 38658704 - 38658602
Alignment:
Q  131 aatctttaccaatttagaacccaaaatcattcaatctctaatctcatatat---caactttaattcccagaaaaatatgctaaattaaattgttgaaagg 227  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||| ||||| ||||||||||||||||||||||||    
T  38658704 aatctttttcaatttagaacccaaaatcattcaatctctaatctcatatatcagcaactttaattcccaaaaaaagatgctaaattaaattgttgaaagg 38658605  T
Q  228 aaa 230  Q
    |||    
T  38658604 aaa 38658602  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 158
Target Start/End: Complemental strand, 16659729 - 16659694
Alignment:
Q  123 tctttttcaatctttaccaatttagaacccaaaatc 158  Q
    ||||||||||||||||||||||||||||||||||||    
T  16659729 tctttttcaatctttaccaatttagaacccaaaatc 16659694  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 158
Target Start/End: Original strand, 14347598 - 14347666
Alignment:
Q  89 catcatcaacaacacaccaacccaagnnnnnnnntctttttcaatctttaccaatttagaacccaaaatc 158  Q
    |||||||||||||||||||||||| |        ||||||||||||||||||||||||||||||||||||    
T  14347598 catcatcaacaacacaccaaccca-gaaaaaaaatctttttcaatctttaccaatttagaacccaaaatc 14347666  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 158
Target Start/End: Complemental strand, 28905282 - 28905247
Alignment:
Q  123 tctttttcaatctttaccaatttagaacccaaaatc 158  Q
    ||||||||||||||||||||||||||||||||||||    
T  28905282 tctttttcaatctttaccaatttagaacccaaaatc 28905247  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 158
Target Start/End: Complemental strand, 28941677 - 28941642
Alignment:
Q  123 tctttttcaatctttaccaatttagaacccaaaatc 158  Q
    ||||||||||||||||||||||||||||||||||||    
T  28941677 tctttttcaatctttaccaatttagaacccaaaatc 28941642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 158
Target Start/End: Complemental strand, 30645585 - 30645517
Alignment:
Q  89 catcatcaacaacacaccaacccaagnnnnnnnntctttttcaatctttaccaatttagaacccaaaatc 158  Q
    |||||||||||||||||||||||| |        ||||||||||| ||||||||||||||||||||||||    
T  30645585 catcatcaacaacacaccaaccca-gaaaaaaaatctttttcaatatttaccaatttagaacccaaaatc 30645517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 158
Target Start/End: Original strand, 42754150 - 42754185
Alignment:
Q  123 tctttttcaatctttaccaatttagaacccaaaatc 158  Q
    ||||||||||||||||||||||||||||||||||||    
T  42754150 tctttttcaatctttaccaatttagaacccaaaatc 42754185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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