View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0162_low_3 (Length: 247)
Name: NF0162_low_3
Description: NF0162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0162_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 43484012 - 43484247
Alignment:
| Q |
1 |
acatggttctagcttttcaaaaggaaggaaacttgaatgcttctgctaatgtcaagcagcttgatcgccttggtgctagacttattagcagcgttcattt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43484012 |
acatggttctagcttttcaaaaggaaggaaacttgaatgcttctgctaatgtcaagcagcttgatcgccttggtgctagacttattagcagcgttcattt |
43484111 |
T |
|
| Q |
101 |
aaattgatttcagtgtagctagcttaggtatgttaaattgtcatcatattcatacaccacttttggtttatttcatgttcatgttcatggtcatagtatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43484112 |
aaattgatttcagtgtagctagcttaggtatgttaaattgtcatcatattcatacaccacttttggtttatttcatgttcatgttcatggtcatagtatg |
43484211 |
T |
|
| Q |
201 |
atgatgttatattctccaaagtactgtctggttcat |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
43484212 |
atgatgttatattctccaaagtactgtctggttcat |
43484247 |
T |
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