View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0162_low_4 (Length: 235)

Name: NF0162_low_4
Description: NF0162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0162_low_4
NF0162_low_4
[»] scaffold0259 (1 HSPs)
scaffold0259 (127-231)||(12271-12375)
[»] scaffold0150 (1 HSPs)
scaffold0150 (127-231)||(39117-39221)
[»] chr6 (2 HSPs)
chr6 (124-231)||(12587589-12587696)
chr6 (124-159)||(28865831-28865866)
[»] chr4 (1 HSPs)
chr4 (124-231)||(53595891-53595998)
[»] chr3 (1 HSPs)
chr3 (124-231)||(53227926-53228033)
[»] chr8 (2 HSPs)
chr8 (124-231)||(16906183-16906290)
chr8 (124-159)||(22594552-22594587)
[»] chr1 (2 HSPs)
chr1 (132-231)||(38658602-38658704)
chr1 (124-159)||(16659694-16659729)
[»] chr7 (1 HSPs)
chr7 (124-159)||(42754150-42754185)
[»] chr5 (4 HSPs)
chr5 (124-159)||(14347631-14347666)
chr5 (124-159)||(28905247-28905282)
chr5 (124-159)||(28941642-28941677)
chr5 (124-159)||(30645517-30645552)


Alignment Details
Target: scaffold0259 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 127 - 231
Target Start/End: Original strand, 12271 - 12375
Alignment:
Q  127 ttttcaatctttaccaatttagaacccaaaatcattcaatctctaatctcatatatcaactttaattcccagaaaaatatgctaaattaaattgttgaaa 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  12271 ttttcaatctttaccaatttagaacccaaaatcattcaatctctaatctcatatatcaactttaattcccagaaaaagatgctaaattaaattgttgaaa 12370  T
Q  227 ggaaa 231  Q
    |||||    
T  12371 ggaaa 12375  T

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Target: scaffold0150 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 127 - 231
Target Start/End: Original strand, 39117 - 39221
Alignment:
Q  127 ttttcaatctttaccaatttagaacccaaaatcattcaatctctaatctcatatatcaactttaattcccagaaaaatatgctaaattaaattgttgaaa 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  39117 ttttcaatctttaccaatttagaacccaaaatcattcaatctctaatctcatatatcaactttaattcccagaaaaagatgctaaattaaattgttgaaa 39216  T
Q  227 ggaaa 231  Q
    |||||    
T  39217 ggaaa 39221  T

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Target: chr6 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 124 - 231
Target Start/End: Complemental strand, 12587696 - 12587589
Alignment:
Q  124 tctttttcaatctttaccaatttagaacccaaaatcattcaatctctaatctcatatatcaactttaattcccagaaaaatatgctaaattaaattgttg 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12587696 tctttttcaatctttaccaatttagaacccaaaatcattcaatctctaatctcatatatcaactttaattcccagaaaaagatgctaaattaaattgttg 12587597  T
Q  224 aaaggaaa 231  Q
    || |||||    
T  12587596 aagggaaa 12587589  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 159
Target Start/End: Original strand, 28865831 - 28865866
Alignment:
Q  124 tctttttcaatctttaccaatttagaacccaaaatc 159  Q
    ||||||||||||||||||||||||||||||||||||    
T  28865831 tctttttcaatctttaccaatttagaacccaaaatc 28865866  T

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Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 124 - 231
Target Start/End: Complemental strand, 53595998 - 53595891
Alignment:
Q  124 tctttttcaatctttaccaatttagaacccaaaatcattcaatctctaatctcatatatcaactttaattcccagaaaaatatgctaaattaaattgttg 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  53595998 tctttttcaatctttaccaatttagaacccaaaatcattcaatctctaatctcatatattaactttaattcccagaaaaagatgctaaattaaattgttg 53595899  T
Q  224 aaaggaaa 231  Q
    ||||||||    
T  53595898 aaaggaaa 53595891  T

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Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 124 - 231
Target Start/End: Complemental strand, 53228033 - 53227926
Alignment:
Q  124 tctttttcaatctttaccaatttagaacccaaaatcattcaatctctaatctcatatatcaactttaattcccagaaaaatatgctaaattaaattgttg 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  53228033 tctttttcaatctttaccaatttagaacccaaaatcattcaatctctaatctcatatatcaactttaatttccagaaaaagatgctaaattaaattgttg 53227934  T
Q  224 aaaggaaa 231  Q
    ||||||||    
T  53227933 aaaggaaa 53227926  T

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Target: chr8 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 124 - 231
Target Start/End: Complemental strand, 16906290 - 16906183
Alignment:
Q  124 tctttttcaatctttaccaatttagaacccaaaatcattcaatctctaatctcatatatcaactttaattcccagaaaaatatgctaaattaaattgttg 223  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  16906290 tctttttcaatctttaccaatttagaaccaaaaatcattcaatctctaatctcatatatcaactttaattcccaaaaaaaaatgctaaattaaattgttg 16906191  T
Q  224 aaaggaaa 231  Q
    ||| ||||    
T  16906190 aaaagaaa 16906183  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 159
Target Start/End: Original strand, 22594552 - 22594587
Alignment:
Q  124 tctttttcaatctttaccaatttagaacccaaaatc 159  Q
    ||||||||||||||||||||||||||||||||||||    
T  22594552 tctttttcaatctttaccaatttagaacccaaaatc 22594587  T

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Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 132 - 231
Target Start/End: Complemental strand, 38658704 - 38658602
Alignment:
Q  132 aatctttaccaatttagaacccaaaatcattcaatctctaatctcatatat---caactttaattcccagaaaaatatgctaaattaaattgttgaaagg 228  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||| ||||| ||||||||||||||||||||||||    
T  38658704 aatctttttcaatttagaacccaaaatcattcaatctctaatctcatatatcagcaactttaattcccaaaaaaagatgctaaattaaattgttgaaagg 38658605  T
Q  229 aaa 231  Q
    |||    
T  38658604 aaa 38658602  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 159
Target Start/End: Complemental strand, 16659729 - 16659694
Alignment:
Q  124 tctttttcaatctttaccaatttagaacccaaaatc 159  Q
    ||||||||||||||||||||||||||||||||||||    
T  16659729 tctttttcaatctttaccaatttagaacccaaaatc 16659694  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 159
Target Start/End: Original strand, 42754150 - 42754185
Alignment:
Q  124 tctttttcaatctttaccaatttagaacccaaaatc 159  Q
    ||||||||||||||||||||||||||||||||||||    
T  42754150 tctttttcaatctttaccaatttagaacccaaaatc 42754185  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 159
Target Start/End: Original strand, 14347631 - 14347666
Alignment:
Q  124 tctttttcaatctttaccaatttagaacccaaaatc 159  Q
    ||||||||||||||||||||||||||||||||||||    
T  14347631 tctttttcaatctttaccaatttagaacccaaaatc 14347666  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 159
Target Start/End: Complemental strand, 28905282 - 28905247
Alignment:
Q  124 tctttttcaatctttaccaatttagaacccaaaatc 159  Q
    ||||||||||||||||||||||||||||||||||||    
T  28905282 tctttttcaatctttaccaatttagaacccaaaatc 28905247  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 159
Target Start/End: Complemental strand, 28941677 - 28941642
Alignment:
Q  124 tctttttcaatctttaccaatttagaacccaaaatc 159  Q
    ||||||||||||||||||||||||||||||||||||    
T  28941677 tctttttcaatctttaccaatttagaacccaaaatc 28941642  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 159
Target Start/End: Complemental strand, 30645552 - 30645517
Alignment:
Q  124 tctttttcaatctttaccaatttagaacccaaaatc 159  Q
    ||||||||||| ||||||||||||||||||||||||    
T  30645552 tctttttcaatatttaccaatttagaacccaaaatc 30645517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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