View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0163_high_5 (Length: 269)
Name: NF0163_high_5
Description: NF0163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0163_high_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 21 - 269
Target Start/End: Complemental strand, 998725 - 998477
Alignment:
| Q |
21 |
ggaagatcactcaaaagtggagtcacttggggagtttttccagaagatcttaaagtgtcacagaaaaaagtatttgatcctcaagataagaatcttcttt |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
998725 |
ggaagatcactcaaaagtggagtcacttggggagtttttccagaagatcttaaagtgtcacagaaaaaagtatttgatcctcaagataagaatcttcttt |
998626 |
T |
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| Q |
121 |
attggaacaagtttttcgagattctatgcatcctttctgtagcttgtgatcctttcnnnnnnnatcttccttatttcaaccacaaatcatattgtttagc |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
998625 |
attggaacaagtttttcgagattctatgcatcctttctgtagcttgtgatcctttctttttttatcttccttatttcaaccacaaatcatattgtttagc |
998526 |
T |
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| Q |
221 |
catagataacgatctagcgaagtttactgttatattgagaacaatatgt |
269 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
998525 |
catagataacaatctagcgaagtttactgttatattgagaacaatatgt |
998477 |
T |
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