View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0163_low_1 (Length: 444)
Name: NF0163_low_1
Description: NF0163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0163_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 7 - 415
Target Start/End: Original strand, 998317 - 998725
Alignment:
| Q |
7 |
gcagcacagaccagaagtcaataatgaaatagcgttgtaaatatcgctttgcgatcaatccaggatctatgacaagttcacctcttccaaatactcgaga |
106 |
Q |
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| T |
998317 |
gcagcacagaccagaagtcaataatgaaatagcgttgtaaatatcgctttgcgatcaatccaggatctatgacaagttcacctcttccaaatactcgaga |
998416 |
T |
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| Q |
107 |
tgaaggtgcaatgaaggcggtgcggaattggaaacttatgcgaatgagataaataaaatcacatattgttctcaatataacagtaaacttcgctagatcg |
206 |
Q |
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| T |
998417 |
tgaaggtgcaatgaaggcggtgcggaattggaaacttatgcgaatgagataaataaaatcacatattgttctcaatataacagtaaacttcgctagattg |
998516 |
T |
|
| Q |
207 |
ttatctatggctaaacaatatgatttgtggttgaaataaggaagatnnnnnnngaaaggatcacaagctacagaaaggatgcatagaatctcgaaaaact |
306 |
Q |
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| T |
998517 |
ttatctatggctaaacaatatgatttgtggttgaaataaggaagataaaaaaagaaaggatcacaagctacagaaaggatgcatagaatctcgaaaaact |
998616 |
T |
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| Q |
307 |
tgttccaataaagaagattcttatcttgaggatcaaatacttttttctgtgacactttaagatcttctggaaaaactccccaagtgactccacttttgag |
406 |
Q |
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| T |
998617 |
tgttccaataaagaagattcttatcttgaggatcaaatacttttttctgtgacactttaagatcttctggaaaaactccccaagtgactccacttttgag |
998716 |
T |
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| Q |
407 |
tgatcttcc |
415 |
Q |
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| T |
998717 |
tgatcttcc |
998725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 121
Target Start/End: Original strand, 9549838 - 9549874
Alignment:
| Q |
85 |
cacctcttccaaatactcgagatgaaggtgcaatgaa |
121 |
Q |
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| T |
9549838 |
cacctcttccaaatactcgagaagaaggagcaatgaa |
9549874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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