View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0163_low_3 (Length: 287)
Name: NF0163_low_3
Description: NF0163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0163_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 6 - 259
Target Start/End: Complemental strand, 11591105 - 11590852
Alignment:
| Q |
6 |
agcagcacagaagagcatcaaaattcacctgatcctnnnnnnncatctacaactaccactgttgctgcagaaggaaccgaatctcaaacacaaaggaaag |
105 |
Q |
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||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11591105 |
agcagaacagaagagcatcaaaattcacctgatcctaaaaaaacatctacaactaccactgttgctgcagaaggaaccgaatctcaaacacaaaggaaag |
11591006 |
T |
|
| Q |
106 |
agcatgatgatgctgttagagcaaagataatgaagcttaataataaactgaaaaaactgaattcatattcttcatttctgaacatcttcaatctcatgtc |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||| ||||| |
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| T |
11591005 |
agcatgatgatgctgttagagcaaagataatgaagcttaataataaactgaaaaaactgaattcatattcttcttttctgaatatcctcaatctaatgtc |
11590906 |
T |
|
| Q |
206 |
tcttacttggcatctggtttatttggctcaaaatgttcatcacagttgctaatt |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
11590905 |
tcttacttggcatctggtttatttggctcaaaatgttcatcagagttgctaatt |
11590852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 6 - 259
Target Start/End: Original strand, 11646562 - 11646815
Alignment:
| Q |
6 |
agcagcacagaagagcatcaaaattcacctgatcctnnnnnnncatctacaactaccactgttgctgcagaaggaaccgaatctcaaacacaaaggaaag |
105 |
Q |
| |
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||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11646562 |
agcagaacagaagagcatcaaaattcacctgatcctaaaaaaacatctacaactaccactgttgctgcagaaggaaccgaatctcaaacacaaaggaaag |
11646661 |
T |
|
| Q |
106 |
agcatgatgatgctgttagagcaaagataatgaagcttaataataaactgaaaaaactgaattcatattcttcatttctgaacatcttcaatctcatgtc |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||| ||||||| ||||| |
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| T |
11646662 |
agcatgatgatgctgttagagcaaagataatgaagcttaataataaactgaaaaaactgaattcgtattcttcttttctgaatatcctcaatctgatgtc |
11646761 |
T |
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| Q |
206 |
tcttacttggcatctggtttatttggctcaaaatgttcatcacagttgctaatt |
259 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
11646762 |
tcttacttggcatctggtttatttggctcaaaatgttcatcagagttgctaatt |
11646815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 201 - 259
Target Start/End: Original strand, 41833746 - 41833804
Alignment:
| Q |
201 |
atgtctcttacttggcatctggtttatttggctcaaaatgttcatcacagttgctaatt |
259 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
41833746 |
atgtctcttacttggcatctggtttatttggctcaaaatgttcatcagagttgctaatt |
41833804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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